Miyakogusa Predicted Gene

Lj1g3v1798630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1798630.1 Non Chatacterized Hit- tr|K4CLV3|K4CLV3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,48.96,7e-18,seg,NULL; coiled-coil,NULL,gene.g32092.t1.1
         (348 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21280.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    77   2e-14

>AT5G21280.1 | Symbols:  | hydroxyproline-rich glycoprotein family
          protein | chr5:7264094-7265514 REVERSE LENGTH=302
          Length = 302

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 39/40 (97%)

Query: 54 VRRRLHTSRPYQERLLNMAEARREIVTALKFHRASMKEAS 93
          VRRRLHTSRPYQERLLNMAEARREIVTALK HRASM++A+
Sbjct: 56 VRRRLHTSRPYQERLLNMAEARREIVTALKQHRASMRQAT 95