Miyakogusa Predicted Gene

Lj1g3v1798520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1798520.1 tr|G7J953|G7J953_MEDTR DNA cross-link repair 1A
protein OS=Medicago truncatula GN=MTR_3g105470 PE=4
,83.33,0.000000000000002,no description,Sterile alpha motif/pointed
domain; no description,NULL; DNA CROSS-LINK REPAIR
PROTEI,gene.g32083.t1.1
         (621 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45700.1 | Symbols:  | sterile alpha motif (SAM) domain-conta...   474   e-134
AT3G26680.3 | Symbols: SNM1 | DNA repair metallo-beta-lactamase ...   172   7e-43
AT3G26680.2 | Symbols: SNM1 | DNA repair metallo-beta-lactamase ...   172   7e-43
AT3G26680.1 | Symbols: SNM1, ATSNM1 | DNA repair metallo-beta-la...   172   7e-43
AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:248849...   145   1e-34
AT1G27410.1 | Symbols:  | DNA repair metallo-beta-lactamase fami...    97   3e-20
AT1G19025.1 | Symbols:  | DNA repair metallo-beta-lactamase fami...    59   9e-09

>AT2G45700.1 | Symbols:  | sterile alpha motif (SAM)
           domain-containing protein | chr2:18827216-18830505
           REVERSE LENGTH=723
          Length = 723

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 356/619 (57%), Gaps = 101/619 (16%)

Query: 22  DDDEFEIPLTQTATIHRPL--------------KKHKLETTAFGGSGKENV--PPN---- 61
           DDD+F+IP +   +I +PL              KK +L        GKENV  PP+    
Sbjct: 8   DDDDFQIPPSSQLSIRKPLHPTNANNISHRPPNKKPRLCRYP----GKENVTPPPSPDPD 63

Query: 62  --ASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDXXXXXXXXXXXXXXXXXPVKVKMK 119
              SSST H        C LD IPS++D    +L D                    +K+ 
Sbjct: 64  LFCSSSTPH--------CILDCIPSSVD---CSLGDFNGPISSLGEEDKEDKDDC-IKVN 111

Query: 120 GTAYFGNSIESKLVVSR--------------ANAINNAEAGSELNLSDELDG-------- 157
              Y  NS+E++L+ SR                  +N+E    +NL  E +G        
Sbjct: 112 REGYLCNSMEARLLKSRICLGFDSGIHEDDEGFVESNSELDVLINLCSESEGRSGEFSLG 171

Query: 158 ---SVRCPLCEVDISNLTEEQRHLHTNDCLXXXXXXXXXXXXXXX--------------- 199
              S++CPLC +DIS+L+EEQR +H+N CL                              
Sbjct: 172 KDDSIQCPLCSMDISSLSEEQRQVHSNTCLDKSYNQPSEQDSLRKCENLSSLIKESIDDP 231

Query: 200 ----QFAPKVSRVVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKK 255
               Q    +S V+ WLR LGL KYEDVF+REE+DWDTLQ LTEEDLLS+G+T+LGPRKK
Sbjct: 232 VQLPQLVTDLSPVLKWLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKK 291

Query: 256 IVHALCEFRKGIAASNEKPEDA------LAEPRRNRNQNVKMQPHRPERKVDGTSKPAAN 309
           IV+AL   R   A+S E    +      + E +R+++           RK     KP AN
Sbjct: 292 IVNALSGVRDPFASSAEVQAQSHCTSGHVTERQRDKSTT---------RKASEPKKPTAN 342

Query: 310 KKITEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPKWCSIEG 369
           K ITE+FPG AT G K+ TAP+   E   S S S R    + +  N K + +P W  I G
Sbjct: 343 KLITEFFPGQATEGTKIRTAPKPVAEKSPSDSSSRR--AVRRNGNNGKSKVIPHWNCIPG 400

Query: 370 TPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGIPYDK 429
           TPFRVDAFKYL  DC HWFLTHFHLDHYQGLTKSF+HGKIYCS +TA+LVNM IGIP+++
Sbjct: 401 TPFRVDAFKYLTRDCCHWFLTHFHLDHYQGLTKSFSHGKIYCSLVTAKLVNMKIGIPWER 460

Query: 430 LHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDELAINPVLR 489
           L +L L QKV I+GIDVTC DANHCPGSI+ILF+P NGKAVLHTGDFR+S+E++    L 
Sbjct: 461 LQVLDLGQKVNISGIDVTCFDANHCPGSIMILFEPANGKAVLHTGDFRYSEEMS--NWLI 518

Query: 490 MCPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGTLFLIGSYTIGRVQYNTS 549
              + +LILDTTYCNPQYDFPKQEAVIQFV++AIQAEAFNP TLFLIGSYTIG+ +    
Sbjct: 519 GSHISSLILDTTYCNPQYDFPKQEAVIQFVVEAIQAEAFNPKTLFLIGSYTIGKERLFLE 578

Query: 550 LDIMLHTKQEKKGYSLRLL 568
           +  +L  K       L+LL
Sbjct: 579 VARVLREKIYINPAKLKLL 597



 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 47/63 (74%)

Query: 557 KQEKKGYSLRLLVRYEERYEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMI 616
           K +KK    RL      RYEVPYSEH SFTELK+FV+ +SP  IIPSVNNDGP+SA AM+
Sbjct: 659 KTKKKSPGRRLQQGTIIRYEVPYSEHSSFTELKEFVQKVSPEVIIPSVNNDGPDSAAAMV 718

Query: 617 SLM 619
           SL+
Sbjct: 719 SLL 721


>AT3G26680.3 | Symbols: SNM1 | DNA repair metallo-beta-lactamase
           family protein | chr3:9801309-9803517 FORWARD LENGTH=484
          Length = 484

 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 14/246 (5%)

Query: 306 PAANKKI--TEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPK 363
           P   KK+  T+ F  +        T+P      K++ ++  R  +  +S +N   R  P 
Sbjct: 90  PDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKR--RRDSSFSNDSPRPCPF 147

Query: 364 WCSIEGTPFRVDAFKY--LRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNM 421
           +  + GTPF VDAF+Y  ++G CS +FLTHFH DHY GLTK+++HG IYCSS+T+RL+ +
Sbjct: 148 YKKLPGTPFTVDAFRYGCVQG-CSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRL 206

Query: 422 NIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDE 481
           ++ +    +H L L+ +  I GI VT ++ANHCPG+ +I F+  +G   LHTGDFR S +
Sbjct: 207 SLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQ 266

Query: 482 LAINPVLRMCPVHTLILDTTYCNPQYDFPKQEAVIQFVI----DAIQAEAFNPGTLFLIG 537
           +  +P+L    VH L LDTTYCNP+Y FP +E V+ +V+    D ++ +   P TL ++G
Sbjct: 267 MQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQ---PKTLIVVG 323

Query: 538 SYTIGR 543
           SY+IG+
Sbjct: 324 SYSIGK 329



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 575 YEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMIS 617
           Y VPYSEH SFTEL++FV+ + P  IIP+VNN    +   M S
Sbjct: 434 YGVPYSEHSSFTELREFVQFLRPDKIIPTVNNGNAGTREKMQS 476


>AT3G26680.2 | Symbols: SNM1 | DNA repair metallo-beta-lactamase
           family protein | chr3:9801309-9803517 FORWARD LENGTH=484
          Length = 484

 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 14/246 (5%)

Query: 306 PAANKKI--TEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPK 363
           P   KK+  T+ F  +        T+P      K++ ++  R  +  +S +N   R  P 
Sbjct: 90  PDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKR--RRDSSFSNDSPRPCPF 147

Query: 364 WCSIEGTPFRVDAFKY--LRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNM 421
           +  + GTPF VDAF+Y  ++G CS +FLTHFH DHY GLTK+++HG IYCSS+T+RL+ +
Sbjct: 148 YKKLPGTPFTVDAFRYGCVQG-CSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRL 206

Query: 422 NIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDE 481
           ++ +    +H L L+ +  I GI VT ++ANHCPG+ +I F+  +G   LHTGDFR S +
Sbjct: 207 SLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQ 266

Query: 482 LAINPVLRMCPVHTLILDTTYCNPQYDFPKQEAVIQFVI----DAIQAEAFNPGTLFLIG 537
           +  +P+L    VH L LDTTYCNP+Y FP +E V+ +V+    D ++ +   P TL ++G
Sbjct: 267 MQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQ---PKTLIVVG 323

Query: 538 SYTIGR 543
           SY+IG+
Sbjct: 324 SYSIGK 329



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 575 YEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMIS 617
           Y VPYSEH SFTEL++FV+ + P  IIP+VNN    +   M S
Sbjct: 434 YGVPYSEHSSFTELREFVQFLRPDKIIPTVNNGNAGTREKMQS 476


>AT3G26680.1 | Symbols: SNM1, ATSNM1 | DNA repair
           metallo-beta-lactamase family protein |
           chr3:9801309-9803517 FORWARD LENGTH=484
          Length = 484

 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 14/246 (5%)

Query: 306 PAANKKI--TEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPK 363
           P   KK+  T+ F  +        T+P      K++ ++  R  +  +S +N   R  P 
Sbjct: 90  PDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKR--RRDSSFSNDSPRPCPF 147

Query: 364 WCSIEGTPFRVDAFKY--LRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNM 421
           +  + GTPF VDAF+Y  ++G CS +FLTHFH DHY GLTK+++HG IYCSS+T+RL+ +
Sbjct: 148 YKKLPGTPFTVDAFRYGCVQG-CSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRL 206

Query: 422 NIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDE 481
           ++ +    +H L L+ +  I GI VT ++ANHCPG+ +I F+  +G   LHTGDFR S +
Sbjct: 207 SLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQ 266

Query: 482 LAINPVLRMCPVHTLILDTTYCNPQYDFPKQEAVIQFVI----DAIQAEAFNPGTLFLIG 537
           +  +P+L    VH L LDTTYCNP+Y FP +E V+ +V+    D ++ +   P TL ++G
Sbjct: 267 MQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQ---PKTLIVVG 323

Query: 538 SYTIGR 543
           SY+IG+
Sbjct: 324 SYSIGK 329



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 575 YEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMIS 617
           Y VPYSEH SFTEL++FV+ + P  IIP+VNN    +   M S
Sbjct: 434 YGVPYSEHSSFTELREFVQFLRPDKIIPTVNNGNAGTREKMQS 476


>AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 |
           chr1:24884991-24891823 FORWARD LENGTH=1396
          Length = 1396

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 7/189 (3%)

Query: 361 VPKWCSIEGTPFRVDAFKYLRGDCS-HWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLV 419
           +P    I  T F VD F+      S  +FL+HFH DHY GL+ S++ G IYCS  TARLV
Sbjct: 54  IPNSKRIPNTNFIVDLFRLPHQSSSVAFFLSHFHSDHYSGLSSSWSKGIIYCSHKTARLV 113

Query: 420 NMNIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILF----QPPNGKAVLHTGD 475
              + +P   +  LP+NQ V+I G +V  ++ANHCPG++  LF    +    +  +HTGD
Sbjct: 114 AEILQVPSQFVFALPMNQMVKIDGSEVVLIEANHCPGAVQFLFKVKLESSGFEKYVHTGD 173

Query: 476 FRFSDELAINPVLR-MCPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGTLF 534
           FRF DE+  +P L        + LDTTYCNP++ FP QE  + +V+  I   +     LF
Sbjct: 174 FRFCDEMRFDPFLNGFVGCDGVFLDTTYCNPKFVFPSQEESVGYVVSVIDKIS-EEKVLF 232

Query: 535 LIGSYTIGR 543
           L+ +Y +G+
Sbjct: 233 LVATYVVGK 241


>AT1G27410.1 | Symbols:  | DNA repair metallo-beta-lactamase family
           protein | chr1:9517226-9518743 FORWARD LENGTH=422
          Length = 422

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 21/180 (11%)

Query: 381 RGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNI-GIPYDKLHILPLNQKV 439
           R     +FLTH H DH +GL+  ++ G +YCS  TA L      G     L ++PL    
Sbjct: 12  RNGSQAYFLTHIHSDHTRGLSGGWSQGPLYCSRTTASLFPSRFPGFDLSLLRVVPLFSWT 71

Query: 440 EIA----------GIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRF----SDELAIN 485
            ++           + +  +DA+HCPGSI+ LF+   G   L+TGDFR+    SDE    
Sbjct: 72  SLSLRSPSSGSTVRLHLMAIDAHHCPGSIMFLFRGDFG-CFLYTGDFRWDSDASDEARTT 130

Query: 486 PVLRM--CPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGTLFLIGSYTIGR 543
            V  +   PV  L LD TYCNP Y FP +   +Q V D I   A +P    +I   ++G+
Sbjct: 131 LVAAIDEFPVDILYLDNTYCNPIYSFPSRLVAVQLVADII---ASHPSHDIIIAVDSLGK 187


>AT1G19025.1 | Symbols:  | DNA repair metallo-beta-lactamase family
           protein | chr1:6568920-6570800 FORWARD LENGTH=549
          Length = 549

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 22/176 (12%)

Query: 369 GTPFRVDAF---KYLRGDCSHWFLTHFHLDHYQGLTKS-FNHGKIYCSSITARLVNMNIG 424
           G PF VD F      +    H FLTH H DH  G++ S      IY +S+T  L+     
Sbjct: 8   GLPFAVDTFGPYTETKRRKRHHFLTHAHKDHTVGVSPSNIVVFPIYSTSLTISLLLQRFP 67

Query: 425 IPYDKLHI-LPLNQKVEIAGID----VTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFS 479
              +   + + + Q V +   D    VT  DANHCPG+++ LF+   G  +LHTGD R +
Sbjct: 68  QLDESYFVRVEIGQSVIVDDPDGEFKVTAFDANHCPGAVMFLFEGSFGN-ILHTGDCRLT 126

Query: 480 -DELAINP---------VLRMCPVHTLILDTTYCNPQYD--FPKQEAVIQFVIDAI 523
            D L   P         +   C +  + LD T+    +   FP + + I+ +I+ I
Sbjct: 127 LDCLHSLPEKYVGRSHGMKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCI 182