Miyakogusa Predicted Gene

Lj1g3v1788290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788290.1 Non Chatacterized Hit- tr|B9RQX8|B9RQX8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,63.41,4e-19,seg,NULL,CUFF.27939.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   2e-12
AT5G21940.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    65   7e-12

>AT3G43850.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: vacuole; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins
           in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes -
           2 (source: NCBI BLink). | chr3:15702085-15704152 REVERSE
           LENGTH=270
          Length = 270

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 9/82 (10%)

Query: 22  IGKNSDLSSETESGDMKNEAQSSYKCNGPLDMMDSLQQVLPIRRGISKFYDGKSKXXXXX 81
           IG+NSD   + E G+  NE +SSY  NGPLDMM+SL++ LPI+R ISKFY GKSK     
Sbjct: 30  IGENSD---DDEGGE--NEIESSY--NGPLDMMESLEEALPIKRAISKFYKGKSK--SFM 80

Query: 82  XXXXXXXXXXKDIGKPDDAYTR 103
                     KD+ KP++ Y+R
Sbjct: 81  SLSETSSLPVKDLTKPENLYSR 102


>AT5G21940.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:7249446-7250353 REVERSE LENGTH=264
          Length = 264

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 10/90 (11%)

Query: 22  IGKNSD---LSSETESGDM-KNEAQSSYKCNGPLDMMDSLQQVLPIRRGISKFYDGKSKX 77
           IG+NSD    SSE    D  +NE +S YK  GPL+MM+SL+QVLP+R+GISK+Y GKSK 
Sbjct: 44  IGRNSDDGEKSSEDGGDDAGENEVESPYK--GPLEMMESLEQVLPVRKGISKYYSGKSKS 101

Query: 78  XXXXXXXXXXXXXX----KDIGKPDDAYTR 103
                             KD+ KP++ Y+R
Sbjct: 102 FTNLTAEAASALTSSSSMKDLAKPENPYSR 131