Miyakogusa Predicted Gene
- Lj1g3v1788200.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1788200.2 tr|I1JK05|I1JK05_SOYBN Eukaryotic translation
initiation factor 3 subunit B OS=Glycine max PE=3 SV=1,83.93,0,TolB,
C-terminal domain,NULL; eIF2A,Translation initiation factor 2A, beta
propellor-like domain; SU,CUFF.27930.2
(224 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27640.1 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3... 300 5e-82
AT5G27640.2 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3... 300 6e-82
AT5G25780.1 | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic tr... 294 3e-80
AT1G73180.1 | Symbols: | Eukaryotic translation initiation fact... 62 3e-10
AT1G73180.2 | Symbols: | Eukaryotic translation initiation fact... 62 3e-10
AT1G49015.1 | Symbols: | DPP6 N-terminal domain-like protein | ... 48 5e-06
>AT5G27640.1 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1
| translation initiation factor 3B1 |
chr5:9781207-9784759 REVERSE LENGTH=712
Length = 712
Score = 300 bits (768), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 141/188 (75%), Positives = 161/188 (85%)
Query: 1 MRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAE 60
M+TAQ G VSKL LK KQANALFWSP G++I++AGLKGFNGQLEF+NVDELETM TAE
Sbjct: 492 MKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAE 551
Query: 61 HFMTTDIEWDPTGRYVTTSVTSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPSF 120
HFM TDIEWDPTGRYV T+VTSVH++ENGF IWSF+G LYRI+KDHFFQ +WR RPPSF
Sbjct: 552 HFMATDIEWDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611
Query: 121 LTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEE 180
LT EKEEEIA LKKYSKKYEAEDQD S+LLSEQ++EK + LKEEW+ WV +WK +HEEE
Sbjct: 612 LTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKEEWEKWVMQWKSLHEEE 671
Query: 181 KLQREQHR 188
KL R+ R
Sbjct: 672 KLVRQNLR 679
>AT5G27640.2 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1
| translation initiation factor 3B1 |
chr5:9781207-9784759 REVERSE LENGTH=738
Length = 738
Score = 300 bits (767), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 141/188 (75%), Positives = 161/188 (85%)
Query: 1 MRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAE 60
M+TAQ G VSKL LK KQANALFWSP G++I++AGLKGFNGQLEF+NVDELETM TAE
Sbjct: 518 MKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAE 577
Query: 61 HFMTTDIEWDPTGRYVTTSVTSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPSF 120
HFM TDIEWDPTGRYV T+VTSVH++ENGF IWSF+G LYRI+KDHFFQ +WR RPPSF
Sbjct: 578 HFMATDIEWDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 637
Query: 121 LTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEE 180
LT EKEEEIA LKKYSKKYEAEDQD S+LLSEQ++EK + LKEEW+ WV +WK +HEEE
Sbjct: 638 LTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKEEWEKWVMQWKSLHEEE 697
Query: 181 KLQREQHR 188
KL R+ R
Sbjct: 698 KLVRQNLR 705
>AT5G25780.1 | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic
translation initiation factor 3B-2 |
chr5:8973420-8976758 REVERSE LENGTH=714
Length = 714
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 137/188 (72%), Positives = 158/188 (84%)
Query: 1 MRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAE 60
M+TAQ G VSKL LK KQANALFWSP G++I++AGLKGFNGQLEF+NVDELETM TAE
Sbjct: 493 MKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAE 552
Query: 61 HFMTTDIEWDPTGRYVTTSVTSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPPSF 120
HFM TDIEWDPTGRYV TSVT+VH++ENGF IWSF+G +YRI+KDHFFQ +WR RP SF
Sbjct: 553 HFMATDIEWDPTGRYVATSVTTVHEMENGFTIWSFNGNMVYRILKDHFFQLAWRPRPASF 612
Query: 121 LTPEKEEEIANNLKKYSKKYEAEDQDESMLLSEQEQEKCRMLKEEWDMWVNEWKWMHEEE 180
LT EKEEEIA NL+ YSK+YEAEDQD S+LLSEQ++EK R L EEW WV +WK +HEEE
Sbjct: 613 LTAEKEEEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKWVMQWKSLHEEE 672
Query: 181 KLQREQHR 188
KL R+ R
Sbjct: 673 KLVRQNLR 680
>AT1G73180.1 | Symbols: | Eukaryotic translation initiation factor
eIF2A family protein | chr1:27518335-27521432 FORWARD
LENGTH=513
Length = 513
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 22 NALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAEHFMTTDIEWDPTGRY-VTTSV 80
N L W+P GR + VAG G + F++V + + + + + EW P GRY +T S
Sbjct: 317 NTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTAST 376
Query: 81 TSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPP 118
++NG I+++ GK Y+ M + +Q W+ P
Sbjct: 377 APRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPESP 414
>AT1G73180.2 | Symbols: | Eukaryotic translation initiation factor
eIF2A family protein | chr1:27518335-27521014 FORWARD
LENGTH=484
Length = 484
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 22 NALFWSPAGRFIVVAGLKGFNGQLEFYNVDELETMVTAEHFMTTDIEWDPTGRY-VTTSV 80
N L W+P GR + VAG G + F++V + + + + + EW P GRY +T S
Sbjct: 317 NTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTAST 376
Query: 81 TSVHDVENGFNIWSFSGKHLYRIMKDHFFQFSWRARPP 118
++NG I+++ GK Y+ M + +Q W+ P
Sbjct: 377 APRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPESP 414
>AT1G49015.1 | Symbols: | DPP6 N-terminal domain-like protein |
chr1:18134528-18135312 FORWARD LENGTH=227
Length = 227
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 1 MRTAQKAGWVSKLTALKGKQANALFWSPAGRFIVVAGLKG 40
M T Q G VSKL K+A+ALFWSP G+ IV+AGLK
Sbjct: 170 METPQNPGKVSKLATFDDKEADALFWSPRGKHIVLAGLKA 209