Miyakogusa Predicted Gene

Lj1g3v1788180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788180.1 Non Chatacterized Hit- tr|I1IFV4|I1IFV4_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,36.26,7e-19,
,CUFF.27931.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02180.1 | Symbols:  | ferredoxin-related | chr1:413619-41450...   138   3e-33

>AT1G02180.1 | Symbols:  | ferredoxin-related | chr1:413619-414505
           REVERSE LENGTH=226
          Length = 226

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 109/170 (64%), Gaps = 5/170 (2%)

Query: 32  NPADKLVAAINENRTAYKVSELYDNAGLACIALQYIKAYQGDCGAVGGPDAKKPPESQFA 91
           N A ++V+ +N+NRTA K+ +L ++ GL C+ALQY++  +G+C  V    + + PE  F 
Sbjct: 29  NSAHEMVSILNQNRTARKLGKLNESPGLGCMALQYVELCEGNCN-VNNTLSCEHPEDDFT 87

Query: 92  EVFAPNCGVKASSLAPITGRFLGCQTKYVHAPE-AFSEVLIQNQRSLEILHSKNHTQVGA 150
           +VFAPNCGV+  +   ITG  LGC +KY  APE AFS++L ++  +L +L +++HT+VG 
Sbjct: 88  QVFAPNCGVELPTFGTITGHILGCSSKYA-APEVAFSDILFRDSSALSVLRNRSHTEVGV 146

Query: 151 AVTGTDGGSPYFWCVLFSGGKPNSTFAFE-GGVAKLTKPGCFSGANDECS 199
            +     G+ +FWC+LFS G  NS+F  E  G     + GC+SG+   CS
Sbjct: 147 GMARLHKGT-FFWCLLFSDGVKNSSFVLEDNGRGIKQRTGCYSGSAFPCS 195