Miyakogusa Predicted Gene

Lj1g3v1788170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788170.1 tr|A8IS75|A8IS75_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206257 PE=4
SV=1,36.05,7e-18,seg,NULL,CUFF.27927.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26340.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   226   1e-59
AT2G26340.2 | Symbols:  | unknown protein. | chr2:11215254-11216...   214   5e-56

>AT2G26340.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast thylakoid lumen,
           chloroplast; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to
           38 proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:11215254-11216480 FORWARD LENGTH=253
          Length = 253

 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 156/227 (68%), Gaps = 10/227 (4%)

Query: 9   HVSNCKPLLCSTSKARPVRCA--LSPPTWRESRRMXXXXXXXXXXXXXPNRA-EGGV--- 62
           H +   PL  S S  + + CA  LSPP W++SRR+             PN A  GG+   
Sbjct: 28  HATVSLPLF-SNSNHKKLTCAATLSPPPWKQSRRVISVSFFLSRLLLLPNDAMAGGLMDK 86

Query: 63  FDKYVKRKKLDPLETYVPAVILTEFQFKDLEKTLEVDKPQFDLCRSLLRSGPAASLRVNI 122
            DKYVKRKKLDPLE YVP VIL + Q +DLE  L V+KP+F+ CR  LRSGPA+SLRVNI
Sbjct: 87  LDKYVKRKKLDPLEAYVPPVILAQLQIQDLEGFLNVEKPEFEACRRQLRSGPASSLRVNI 146

Query: 123 RAVAQYASDSGNGKTAMNNVDDCLRSLEELDSLFLNASRNDPAASVKSMKAKISTALGAL 182
           RAVAQYASD G  KTA ++VD CLR+LEELDSLFL ASR D  A+V  MK+++ TAL AL
Sbjct: 147 RAVAQYASDDGFSKTATDDVDRCLRALEELDSLFLRASRKDSNATVVLMKSQLGTALTAL 206

Query: 183 DSLLQTVPSDVLSKGKVIADSYR--DQEDVETESLD-PELKQLESVL 226
           DSLLQTVPS VL KGK + + YR   +ED  ++ L+  E+KQL+S+L
Sbjct: 207 DSLLQTVPSQVLDKGKAMVEVYRSASEEDAGSDDLESSEIKQLQSIL 253


>AT2G26340.2 | Symbols:  | unknown protein. | chr2:11215254-11216991
           FORWARD LENGTH=264
          Length = 264

 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/227 (54%), Positives = 153/227 (67%), Gaps = 13/227 (5%)

Query: 9   HVSNCKPLLCSTSKARPVRCA--LSPPTWRESRRMXXXXXXXXXXXXXPNRA-EGGV--- 62
           H +   PL  S S  + + CA  LSPP W++SRR+             PN A  GG+   
Sbjct: 28  HATVSLPLF-SNSNHKKLTCAATLSPPPWKQSRRVISVSFFLSRLLLLPNDAMAGGLMDK 86

Query: 63  FDKYVKRKKLDPLETYVPAVILTEFQFKDLEKTLEVDKPQFDLCRSLLRSGPAASLRVNI 122
            DKYVKRKKLDPLE YVP VIL + Q +DLE  L V+KP+F+ CR  LRSGPA+SLRVNI
Sbjct: 87  LDKYVKRKKLDPLEAYVPPVILAQLQIQDLEGFLNVEKPEFEACRRQLRSGPASSLRVNI 146

Query: 123 RAVAQYASDSGNGKTAMNNVDDCLRSLEELDSLFLNASRNDPAASVKSMKAKISTALGAL 182
           RA   YASD G  KTA ++VD CLR+LEELDSLFL ASR D  A+V  MK+++ TAL AL
Sbjct: 147 RA---YASDDGFSKTATDDVDRCLRALEELDSLFLRASRKDSNATVVLMKSQLGTALTAL 203

Query: 183 DSLLQTVPSDVLSKGKVIADSYR--DQEDVETESLD-PELKQLESVL 226
           DSLLQTVPS VL KGK + + YR   +ED  ++ L+  E+KQL+S+L
Sbjct: 204 DSLLQTVPSQVLDKGKAMVEVYRSASEEDAGSDDLESSEIKQLQSIL 250