Miyakogusa Predicted Gene

Lj1g3v1788160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788160.1 tr|I7JWI7|I7JWI7_MARPO NDH subunit NdhU
OS=Marchantia polymorpha GN=ndhU PE=4 SV=1,34.05,2e-18,Chaperone
J-domain,Heat shock protein DnaJ, N-terminal; seg,NULL; no
description,Heat shock protein ,CUFF.27922.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21430.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...   156   1e-38
AT5G21430.2 | Symbols:  | Chaperone DnaJ-domain superfamily prot...   151   3e-37

>AT5G21430.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr5:7222294-7223400 FORWARD LENGTH=218
          Length = 218

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 110/193 (56%), Gaps = 12/193 (6%)

Query: 31  STNCFHVKP-----RRLC--IRSSSDVSAETTDTEVESI----EVPKEPPSLISALNVER 79
           ST  F  KP     R +C   R+SS+VSAE  +TE  S     E PKE PSLISALNVER
Sbjct: 26  STCSFPWKPTINTKRIICSPARNSSEVSAEA-ETEGGSSTAVDEAPKESPSLISALNVER 84

Query: 80  ALRGLPITDADHYGRLGIPRGYPSNKVAVAYNNKVXXXXXXXXXXXXXXXXXXXXXXXYT 139
           ALRGLPITD DHYGRLGI R    ++V + Y  +V                       YT
Sbjct: 85  ALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVKELKEQGLDEEQLKTKMDLIKESYT 144

Query: 140 IMSSVEERRLYDWSLARTENTGRYNWPYEADIXXXXXXXXXXXXXXDVGPTRVVGFVFLG 199
           I+S+VEERR+YDWSLAR+E   RY WP+E DI              DVGPTR++G+    
Sbjct: 145 ILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPSREEPPPQEPEDVGPTRILGYFIGA 204

Query: 200 WIVISVVLSISLN 212
           W+V+ V LS++ N
Sbjct: 205 WLVLGVALSVAFN 217


>AT5G21430.2 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr5:7222294-7223400 FORWARD LENGTH=217
          Length = 217

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 110/194 (56%), Gaps = 15/194 (7%)

Query: 31  STNCFHVKP-----RRLC--IRSSSDVSAET-----TDTEVESIEVPKEPPSLISALNVE 78
           ST  F  KP     R +C   R+SS+VSAE      + T V+  E PKE PSLISALNVE
Sbjct: 26  STCSFPWKPTINTKRIICSPARNSSEVSAEAETEGGSSTAVD--EAPKESPSLISALNVE 83

Query: 79  RALRGLPITDADHYGRLGIPRGYPSNKVAVAYNNKVXXXXXXXXXXXXXXXXXXXXXXXY 138
           RALRGLPITD DHYGRLGI R    ++V + Y  +V                       Y
Sbjct: 84  RALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKERVKELKEQGLDEEQLKTKMDLIKS-Y 142

Query: 139 TIMSSVEERRLYDWSLARTENTGRYNWPYEADIXXXXXXXXXXXXXXDVGPTRVVGFVFL 198
           TI+S+VEERR+YDWSLAR+E   RY WP+E DI              DVGPTR++G+   
Sbjct: 143 TILSTVEERRMYDWSLARSEKAERYVWPFEVDIMEPSREEPPPQEPEDVGPTRILGYFIG 202

Query: 199 GWIVISVVLSISLN 212
            W+V+ V LS++ N
Sbjct: 203 AWLVLGVALSVAFN 216