Miyakogusa Predicted Gene

Lj1g3v1788140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788140.1 Non Chatacterized Hit- tr|D7LA68|D7LA68_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,53.4,2e-19,PsbX,Photosystem II PsbX,CUFF.27929.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06520.1 | Symbols: PSBX | photosystem II subunit X | chr2:25...   102   6e-23

>AT2G06520.1 | Symbols: PSBX | photosystem II subunit X |
           chr2:2587868-2588218 REVERSE LENGTH=116
          Length = 116

 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query: 20  LNNPSSQSFFQPLPIRQNKTLFAKPSSKSKHGIHASLKEKAVAGLTAASMTASMVIPEVA 79
           LN   S  F +PLP++ +K L A      +  + A   +KA+ G++AA++TASMVIPE+A
Sbjct: 13  LNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIA 72

Query: 80  NAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFDPVKR 122
            AAG+ ++PSLKNFLLSIA+GG+VLT I   V+GVSNFDPVKR
Sbjct: 73  EAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKR 115