Miyakogusa Predicted Gene

Lj1g3v1787550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1787550.1 tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein
OS=Oryza sativa subsp. japonica GN=OJ1439_F07.25 PE=4
SV,46.88,1e-18,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; RNA-binding ,CUFF.27882.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid bindin...   110   9e-25
AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   110   1e-24
AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid bindin...   109   2e-24
AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   109   2e-24
AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotei...    54   1e-07
AT2G42240.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   3e-07
AT2G42240.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   3e-07
AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   3e-07
AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:195...    52   3e-07
AT1G06960.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   3e-07
AT1G06960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   4e-07
AT1G06960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   4e-07
AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   5e-07

>AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7465200 REVERSE LENGTH=421
          Length = 421

 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 73/98 (74%), Gaps = 2/98 (2%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPR-RSGDKAMVLCFVEFDDSKCA 187
           SN L+V+GLP +C+RREV H+FRPF+GY+++R+V ++ + RSGD   VLCFV+F++S CA
Sbjct: 322 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACA 380

Query: 188 LTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 225
            TA+ ALQ Y+ D+ +PDS+ L++QF   P   P   G
Sbjct: 381 ATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRG 418


>AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=233
          Length = 233

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 93  LDDPVLRTKRDTSLGVNPD---VSSERPIPKANREGLAD-SNVLFVDGLPRDCTRREVGH 148
           +DD +LR      L   P+   +  + P P   R   +D SN L+V+GLP +C+RREV H
Sbjct: 95  IDDFMLRRGGVLPLDHGPNGHTIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVAH 154

Query: 149 LFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRT 208
           +FRPF+GY+++R+V K+ +      +VLCFV+F +  CA TA+ ALQGY+ D+ + DS+ 
Sbjct: 155 IFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKF 214

Query: 209 LKIQFAHFPFRPPADNG 225
           L++QF+  P   P   G
Sbjct: 215 LRLQFSRKPGSRPGQRG 231


>AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7466164 REVERSE LENGTH=253
          Length = 253

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 73/98 (74%), Gaps = 2/98 (2%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPR-RSGDKAMVLCFVEFDDSKCA 187
           SN L+V+GLP +C+RREV H+FRPF+GY+++R+V ++ + RSGD   VLCFV+F++S CA
Sbjct: 154 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACA 212

Query: 188 LTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 225
            TA+ ALQ Y+ D+ +PDS+ L++QF   P   P   G
Sbjct: 213 ATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRG 250


>AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=179
          Length = 179

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 93  LDDPVLRTKRDTSLGVNPD---VSSERPIPKANREGLAD-SNVLFVDGLPRDCTRREVGH 148
           +DD +LR      L   P+   +  + P P   R   +D SN L+V+GLP +C+RREV H
Sbjct: 41  IDDFMLRRGGVLPLDHGPNGHTIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVAH 100

Query: 149 LFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRT 208
           +FRPF+GY+++R+V K+ +      +VLCFV+F +  CA TA+ ALQGY+ D+ + DS+ 
Sbjct: 101 IFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKF 160

Query: 209 LKIQFAHFPFRPPADNG 225
           L++QF+  P   P   G
Sbjct: 161 LRLQFSRKPGSRPGQRG 177


>AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B
           | chr2:12905557-12907434 REVERSE LENGTH=232
          Length = 232

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 121 ANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVE 180
           + +E +  +N+LF+  LP + T   +  LF  + G+K+IR++  +P         + FVE
Sbjct: 149 SGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--------IAFVE 200

Query: 181 FDDSKCALTAMEALQGYKFDDKKP 204
           ++D   A  AM+ LQG+K   + P
Sbjct: 201 YEDDVQASIAMQPLQGFKITPQNP 224


>AT2G42240.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598972 FORWARD LENGTH=289
          Length = 289

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 131 VLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTA 190
            LFV GLP D   RE+ +LFR F GY+   +      RS D A    F  F D + A+  
Sbjct: 51  TLFVAGLPEDVKPREIYNLFREFPGYETSHL------RSSDGAKPFAFAVFSDLQSAVAV 104

Query: 191 MEALQGYKFDDKKPDSRTLKIQFA 214
           M AL G  FD +K    TL I  A
Sbjct: 105 MHALNGMVFDLEKHS--TLHIDLA 126


>AT2G42240.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598972 FORWARD LENGTH=292
          Length = 292

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 131 VLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTA 190
            LFV GLP D   RE+ +LFR F GY+   +      RS D A    F  F D + A+  
Sbjct: 51  TLFVAGLPEDVKPREIYNLFREFPGYETSHL------RSSDGAKPFAFAVFSDLQSAVAV 104

Query: 191 MEALQGYKFDDKKPDSRTLKIQFA 214
           M AL G  FD +K    TL I  A
Sbjct: 105 MHALNGMVFDLEKHS--TLHIDLA 126


>AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598911 FORWARD LENGTH=302
          Length = 302

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 132 LFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAM 191
           LFV GLP D   RE+ +LFR F GY+   +      RS D A    F  F D + A+  M
Sbjct: 52  LFVAGLPEDVKPREIYNLFREFPGYETSHL------RSSDGAKPFAFAVFSDLQSAVAVM 105

Query: 192 EALQGYKFDDKKPDSRTLKIQFA 214
            AL G  FD +K    TL I  A
Sbjct: 106 HALNGMVFDLEK--HSTLHIDLA 126


>AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A |
           chr2:19517229-19518686 FORWARD LENGTH=250
          Length = 250

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 129 SNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCAL 188
           +N+LFV  LP + T   +  LF  + G+K++R++  +P         + FVEF D   + 
Sbjct: 176 NNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--------IAFVEFADEMQST 227

Query: 189 TAMEALQGYKFDDKK 203
            AM+ LQG+K    +
Sbjct: 228 VAMQGLQGFKIQQNQ 242


>AT1G06960.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135982-2137533 FORWARD LENGTH=200
          Length = 200

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 117 PIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVL 176
           P   + ++ +  +N+LF+  LP +     +  LF  + G+K+IR++  +P         +
Sbjct: 113 PFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--------I 164

Query: 177 CFVEFDDSKCALTAMEALQGYKFDDKKP 204
            FVE++D   +  AM+ALQG+K   + P
Sbjct: 165 AFVEYEDDVQSSMAMQALQGFKITPQNP 192


>AT1G06960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135930-2137533 FORWARD LENGTH=228
          Length = 228

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 117 PIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVL 176
           P   + ++ +  +N+LF+  LP +     +  LF  + G+K+IR++  +P         +
Sbjct: 141 PFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--------I 192

Query: 177 CFVEFDDSKCALTAMEALQGYKFDDKKP 204
            FVE++D   +  AM+ALQG+K   + P
Sbjct: 193 AFVEYEDDVQSSMAMQALQGFKITPQNP 220


>AT1G06960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135930-2137533 FORWARD LENGTH=229
          Length = 229

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 117 PIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVL 176
           P   + ++ +  +N+LF+  LP +     +  LF  + G+K+IR++  +P         +
Sbjct: 142 PFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--------I 193

Query: 177 CFVEFDDSKCALTAMEALQGYKFDDKKP 204
            FVE++D   +  AM+ALQG+K   + P
Sbjct: 194 AFVEYEDDVQSSMAMQALQGFKITPQNP 221


>AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4490859-4492632 REVERSE LENGTH=287
          Length = 287

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 130 NVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALT 189
           N LFV GLP D   RE+ +LFR   G++  ++     + +G    V+ F  F   + AL 
Sbjct: 37  NTLFVSGLPNDVKAREIHNLFRRRHGFESCQL-----KYTGRGDQVVAFATFTSHRFALA 91

Query: 190 AMEALQGYKFD 200
           AM  L G KFD
Sbjct: 92  AMNELNGVKFD 102