Miyakogusa Predicted Gene

Lj1g3v1785880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1785880.1 tr|G7J7M2|G7J7M2_MEDTR NADH-ubiquinone
oxidoreductase subunit-like protein OS=Medicago truncatula
GN,99.3,0,NDH1_NuoB,NADH-ubiquinone oxidoreductase, 20 Kd subunit;
NADH-PLASTOQUINONE OXIDOREDUCTASE,NULL; NAD,CUFF.27829.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11770.1 | Symbols:  | NADH-ubiquinone oxidoreductase 20 kDa ...   270   3e-73
ATCG00430.1 | Symbols: PSBG | photosystem II reaction center pro...   139   8e-34

>AT5G11770.1 | Symbols:  | NADH-ubiquinone oxidoreductase 20 kDa
           subunit, mitochondrial | chr5:3791148-3792929 REVERSE
           LENGTH=218
          Length = 218

 Score =  270 bits (690), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 127/143 (88%), Positives = 128/143 (89%)

Query: 1   MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
           MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM
Sbjct: 76  MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 135

Query: 61  APALRKVYDQMPEPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEAL 120
           APALRKVYDQMPEPRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL
Sbjct: 136 APALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 195

Query: 121 LYGLLQLQKKINRRKDFLHWWTQ 143
           LYGLLQLQKKINRRKDFLHWW +
Sbjct: 196 LYGLLQLQKKINRRKDFLHWWNK 218


>ATCG00430.1 | Symbols: PSBG | photosystem II reaction center
           protein G | chrC:49257-49934 REVERSE LENGTH=225
          Length = 225

 Score =  139 bits (349), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 91/134 (67%), Gaps = 1/134 (0%)

Query: 2   NWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMA 61
           NW+R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D ++ AGT+T KMA
Sbjct: 27  NWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 86

Query: 62  PALRKVYDQMPEPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEAL 120
           P+L ++Y+QMPEP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+
Sbjct: 87  PSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAV 146

Query: 121 LYGLLQLQKKINRR 134
           +  + +L+KKI R 
Sbjct: 147 IDAITKLRKKIARE 160