Miyakogusa Predicted Gene

Lj1g3v1785790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1785790.1 Non Chatacterized Hit- tr|D8TLL4|D8TLL4_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,30.7,3e-16,seg,NULL,CUFF.27821.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32960.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   350   6e-97
AT4G32970.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   293   8e-80

>AT4G32960.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins
           in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62;
           Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
           7 (source: NCBI BLink). | chr4:15908785-15910141 REVERSE
           LENGTH=264
          Length = 264

 Score =  350 bits (898), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 157/233 (67%), Positives = 197/233 (84%), Gaps = 1/233 (0%)

Query: 16  YTLQPSRICNEDILFCIDIDPQSLVEMKTATGHNGRPLTRLDSIKQSILLFVHSKLTINP 75
           Y L+P RI +EDIL CID+D +S+VEMKT TG NGRPL R++ +KQ+I+LF+H+KL+INP
Sbjct: 16  YALKPGRIKSEDILICIDVDAESMVEMKT-TGTNGRPLIRMECVKQAIILFIHNKLSINP 74

Query: 76  DHRFAFATLSNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKKSR 135
           DHRFAFATL+ + +WLKK+F+SD ES +A++RGLS    S++ DLT LFR AA EAK SR
Sbjct: 75  DHRFAFATLAKSAAWLKKEFTSDAESAVASLRGLSGNKSSSRADLTLLFRAAAQEAKVSR 134

Query: 136 AQGRILRVILFYCRSNVRPQHQWPVNQKLYTLDVMYLHDKPGPENCPQEVYDTLVEALEH 195
           AQ RI RVIL YCRS++RP H+WP+NQKL+TLDVMYLHDKP P+NCPQ+VYD+LV+A+EH
Sbjct: 135 AQNRIFRVILIYCRSSMRPTHEWPLNQKLFTLDVMYLHDKPSPDNCPQDVYDSLVDAVEH 194

Query: 196 VSEYEGYILESGQGLARVVFRHVLILLSHPQQRCIQENIDIPKSLAKKAPQGE 248
           VSEYEGYI ESGQGLAR VF+ + +LL+HPQQRC Q+++DIP SLAKK P  E
Sbjct: 195 VSEYEGYIFESGQGLARSVFKPMSMLLTHPQQRCAQDDLDIPMSLAKKVPVTE 247


>AT4G32970.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins
           in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187;
           Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes
           - 110 (source: NCBI BLink). | chr4:15910671-15914300
           REVERSE LENGTH=638
          Length = 638

 Score =  293 bits (750), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 169/219 (77%), Gaps = 3/219 (1%)

Query: 25  NEDILFCIDIDPQSLVEMKTATGHNGRPLTRLDSIKQSILLFVHSKLTINPDHRFAFATL 84
           +EDIL C+D+D +S VEMKT TG NG+PL RL+ +K +I  F+H KL+ N DHRFAFATL
Sbjct: 21  SEDILICVDVDAESTVEMKT-TGTNGKPLNRLECLKLAITRFIHDKLSRNSDHRFAFATL 79

Query: 85  SNTVSWLKKDFSSDVESTMAAMRGLSATNISTQPDLTNLFRLAAHEAKKSRAQGRILRVI 144
           S + +WLKK+FS+D +S  A++R +SAT  S   DLT LF+ AA EAK SRAQ RILRVI
Sbjct: 80  SQSAAWLKKEFSNDAKSAAASLREMSATRSSGPADLTFLFQEAAQEAKTSRAQNRILRVI 139

Query: 145 LFYCRSNVRPQHQWPVNQKLYTLDVMYLHDKPGPENCPQEVYDTLVEALEHVSEYEGYIL 204
           L YCRS+VRP H WP+NQKL+TLDVMYLHDK GP+NC  +VYD+LV+A+E VSEYEGYI 
Sbjct: 140 LMYCRSSVRPTHDWPINQKLFTLDVMYLHDKSGPDNCTHDVYDSLVDAIERVSEYEGYIF 199

Query: 205 ESGQGLARVVFRHVLILLSHPQQRCIQENIDIPKSLAKK 243
           E   GL++ VFR +  LLSHP QRC Q  +D+PK  AKK
Sbjct: 200 EGSHGLSQSVFRRMSTLLSHPPQRCAQ--VDLPKPPAKK 236