Miyakogusa Predicted Gene

Lj1g3v1785420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1785420.1 Non Chatacterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,85.71,0.0000000000005,seg,NULL,CUFF.27810.1
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active...    93   4e-20

>AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active 14
           | chr4:10878914-10881697 FORWARD LENGTH=483
          Length = 483

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 53/73 (72%)

Query: 1   MRAYGIDFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMXXXXXXXXXX 60
           +RAYG++FKEGPDGFGVYASKD+EP RR RVIMEIPLELM+TI +K PWM          
Sbjct: 88  VRAYGVEFKEGPDGFGVYASKDIEPRRRARVIMEIPLELMITIRQKHPWMFFPDIVPIGH 147

Query: 61  XXXXXXNSTNPEV 73
                 NST+PE+
Sbjct: 148 PIFDIINSTDPEI 160