Miyakogusa Predicted Gene

Lj1g3v1743570.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1743570.1 tr|B9IBL5|B9IBL5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_571985 PE=4
SV=1,36.14,2e-18,seg,NULL,CUFF.27748.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58420.1 | Symbols:  | Uncharacterised conserved protein UCP0...    66   1e-11
AT1G10140.1 | Symbols:  | Uncharacterised conserved protein UCP0...    64   3e-11

>AT1G58420.1 | Symbols:  | Uncharacterised conserved protein
           UCP031279 | chr1:21707407-21707946 FORWARD LENGTH=179
          Length = 179

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 84/182 (46%), Gaps = 21/182 (11%)

Query: 2   MRSKGQSQSMFMKIMASPFRALGRARDAYVRSITTCGQSVSYGNPMDPAG-------RFS 54
           M  +GQ Q+ F++I+  P + L +ARD Y+RSIT C     Y + +D A          S
Sbjct: 1   MGKRGQKQNRFLRIVTMPLKVLCKARDLYMRSITGCAARTHYSSAVDAASVPFPRSRSTS 60

Query: 55  SLSRSQSVATSRSGD---GDDYAELLRAASARTMVGRIDMDLILKXXXXXXXXXHRYHTE 111
           S   S + +  RS D    DDY+ELLRAAS R++  + ++D+I++               
Sbjct: 61  SAFSSSASSRRRSSDFTFDDDYSELLRAASVRSLGHKNEIDMIIQQQQQQQQQRQENRVA 120

Query: 112 XXXXXXXX---XXXXVG--MGRIDEETPYDTSEGGVAFVAPDS---YPRSKSYAVGKRNV 163
                          VG  M RIDEE   D  EG V      S   YPRS+S+AV  R  
Sbjct: 121 MGAVTVKGGLPKSSSVGMTMARIDEE---DEEEGSVKNQKKGSDFLYPRSRSHAVTIRGS 177

Query: 164 AF 165
            F
Sbjct: 178 KF 179


>AT1G10140.1 | Symbols:  | Uncharacterised conserved protein
           UCP031279 | chr1:3322970-3323473 REVERSE LENGTH=167
          Length = 167

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 9/98 (9%)

Query: 7   QSQSMFMKIMASPFRALGRARDAYVRSITTCGQSVSYGNPMDPAGRF---------SSLS 57
           Q+QS F++I+++P RALG+ARD YVRSIT C     Y +    +  F         +  S
Sbjct: 3   QNQSKFLRIISTPLRALGKARDFYVRSITGCAARTQYSSSASVSAPFPRSRSSSSAAFSS 62

Query: 58  RSQSVATSRSGDGDDYAELLRAASARTMVGRIDMDLIL 95
            + S  T+  G  +DY+EL+RAAS R++  + ++D+++
Sbjct: 63  SASSRRTTDFGIDEDYSELVRAASVRSLGHKNEIDMLI 100