Miyakogusa Predicted Gene

Lj1g3v1732340.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1732340.1 Non Chatacterized Hit- tr|B6UHS8|B6UHS8_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2 SV=1,52.33,2e-16,
,CUFF.27730.1
         (90 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27461.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   105   5e-24

>AT1G27461.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr1:9537948-9539012 REVERSE LENGTH=354
          Length = 354

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 63/84 (75%), Gaps = 4/84 (4%)

Query: 1   MVGQPQCSWLKSMVTCTRISGEVTLNLPFDSSVPI--SSNGFSCWVRIDWKRDHKNTSSV 58
           M+GQP+CSWL SMV   RI GEV +N   +S +P+   +NGFSCWVRIDW RD K    +
Sbjct: 268 MMGQPECSWLDSMVRGKRICGEVMINF-CESKIPVMTENNGFSCWVRIDWGRDGKE-EYM 325

Query: 59  NAFCDVMRLSCESKHYLFTWRFHT 82
           +AFCDV +L+C+SK Y+FTWRFHT
Sbjct: 326 HAFCDVTKLACDSKDYVFTWRFHT 349