Miyakogusa Predicted Gene
- Lj1g3v1721260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1721260.1 tr|Q5XLI2|Q5XLI2_9POAL D-type cyclin OS=Saccharum
hybrid cultivar ROC16 GN=CycD4.1 PE=2 SV=1,45.54,4e-19,CYCLIN-D,NULL;
CYCLINE,NULL; Cyclin_N,Cyclin, N-terminal; Cyclin_C,Cyclin,
C-terminal; no descriptio,gene.g31859.t1.1
(226 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679497-176... 110 1e-24
AT4G37630.2 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679497-176... 110 1e-24
AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-261... 100 7e-22
AT5G65420.1 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-261... 100 8e-22
AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | Cyclin D2;1 | chr2:9... 97 1e-20
AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280611-3282... 96 2e-20
AT2G22490.2 | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9554157-9555... 96 2e-20
AT1G70210.1 | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:2... 95 4e-20
AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357... 94 7e-20
AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 | chr3:18565322-185... 86 2e-17
AT5G65420.2 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26142110-261... 85 4e-17
AT5G67260.1 | Symbols: CYCD3;2 | CYCLIN D3;2 | chr5:26836313-268... 82 3e-16
AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433... 78 4e-15
AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCLIN D7;1 | chr5:41708... 55 5e-08
AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5363034-5365... 54 7e-08
AT1G44110.1 | Symbols: CYCA1;1 | Cyclin A1;1 | chr1:16775035-167... 50 1e-06
AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-8817... 49 3e-06
>AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 |
chr4:17679497-17680788 FORWARD LENGTH=323
Length = 323
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 29/219 (13%)
Query: 15 WAIRLLSIACLSLAAKMEECNVPGLSEFHWE-DYSFQGKVIQNMELLVLTTLEWNMDIVT 73
WA+RLLS+ACLSLAAKMEE VPGLS++ + D+ F+ VI+ ELL+L+TL+W M+++T
Sbjct: 117 WAMRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLIT 176
Query: 74 PFAFLHYFVTKLCSES---PPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAA-----ATL 125
PF + +YF+ K+ ++ + ++ ++A KE++ +++ V+AA ++
Sbjct: 177 PFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSS 236
Query: 126 VALDQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGDKLLHTPNSSPF 185
+ D +LT E + K SI E +V+ CY QR E E+ + TP
Sbjct: 237 TSSDIRLTREEIANKFGSISWWTSNENENVYLCY---QRTLEIEERKH----MTPPPEIA 289
Query: 186 RSRPIDMTESSQATSSKRRRLTFDDEQSHDGKGLDQESP 224
SR E + S +RRL+FDD DQ SP
Sbjct: 290 VSR-----EPPASGSGAKRRLSFDDS--------DQSSP 315
>AT4G37630.2 | Symbols: CYCD5;1 | cyclin d5;1 |
chr4:17679497-17680788 FORWARD LENGTH=321
Length = 321
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 29/224 (12%)
Query: 10 SENKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWE-DYSFQGKVIQNMELLVLTTLEWN 68
+++ WA+RLLS+ACLSLAAKMEE VPGLS++ + D+ F+ VI+ ELL+L+TL+W
Sbjct: 110 GKDETWAMRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWK 169
Query: 69 MDIVTPFAFLHYFVTKLCSES---PPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAA--- 122
M+++TPF + +YF+ K+ ++ + ++ ++A KE++ +++ V+AA
Sbjct: 170 MNLITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTL 229
Query: 123 --ATLVALDQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGDKLLHTP 180
++ + D +LT E + K SI E +V+ CY QR E E+ + TP
Sbjct: 230 LASSSTSSDIRLTREEIANKFGSISWWTSNENENVYLCY---QRTLEIEERKH----MTP 282
Query: 181 NSSPFRSRPIDMTESSQATSSKRRRLTFDDEQSHDGKGLDQESP 224
SR E + S +RRL+FDD DQ SP
Sbjct: 283 PPEIAVSR-----EPPASGSGAKRRLSFDDS--------DQSSP 313
>AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 |
chr5:26141592-26143750 REVERSE LENGTH=318
Length = 318
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
K W ++LL++ACLSLAAK+EE VP L + D + F+ K +Q MELLVL L+W +
Sbjct: 128 GKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRL 187
Query: 70 DIVTPFAFLHYFVTKL--CSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATL 125
+TP +++ YF+ K+ C + P + + S+++Q+I +T K ++ ++ +PS +AAA L
Sbjct: 188 RAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFLEFRPSEVAAAVAL 245
>AT5G65420.1 | Symbols: CYCD4;1 | CYCLIN D4;1 |
chr5:26141592-26143750 REVERSE LENGTH=308
Length = 308
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
K W ++LL++ACLSLAAK+EE VP L + D + F+ K +Q MELLVL L+W +
Sbjct: 118 GKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRL 177
Query: 70 DIVTPFAFLHYFVTKL--CSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATL 125
+TP +++ YF+ K+ C + P + + S+++Q+I +T K ++ ++ +PS +AAA L
Sbjct: 178 RAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFLEFRPSEVAAAVAL 235
>AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | Cyclin D2;1 |
chr2:9554157-9555873 REVERSE LENGTH=361
Length = 361
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 5/181 (2%)
Query: 11 ENKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWN 68
++K WA +LL+++CLSLA+KMEE +VP + + ED + F+ K I+ MELLV+TTL W
Sbjct: 136 KDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWR 195
Query: 69 MDIVTPFAFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATLVAL 128
+ +TPF+F+ YFV K+ + I+ ++ + I+ T K + +D +PS IAAAA +
Sbjct: 196 LQALTPFSFIDYFVDKISGHVSENLIY-RSSRFILNTTKAIEFLDFRPSEIAAAAAVSVS 254
Query: 129 DQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGDKLLHTPNSSPFRSR 188
T E + + ++ L ++ V C L++ L EE RG L R+
Sbjct: 255 ISGET-ECID-EEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAV 312
Query: 189 P 189
P
Sbjct: 313 P 313
>AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280611-3282342
REVERSE LENGTH=298
Length = 298
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
K W ++LL++ACLSLAAK+EE NVP L + + F+ K +Q MELLVL L W +
Sbjct: 109 GKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRL 168
Query: 70 DIVTPFAFLHYFVTKLCS--ESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATL 125
VTP +++ YF++K+ + P S + ++++Q+I +T K ++ ++ + S IAAA L
Sbjct: 169 RAVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVAL 226
>AT2G22490.2 | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9554157-9555873
REVERSE LENGTH=362
Length = 362
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Query: 11 ENKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWN 68
++K WA +LL+++CLSLA+KMEE +VP + + ED + F+ K I+ MELLV+TTL W
Sbjct: 136 KDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWR 195
Query: 69 MDIVTPFAFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATLVAL 128
+ +TPF+F+ YFV K+ + I+ ++ + I+ T K + +D +PS IAAAA +
Sbjct: 196 LQALTPFSFIDYFVDKISGHVSENLIY-RSSRFILNTTKAIEFLDFRPSEIAAAAAVSVS 254
Query: 129 DQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGDKLLHTPNSSPFRSR 188
T E + + + + + + V C L++ L EE RG L R+
Sbjct: 255 ISGET-ECIDEEKALSSLIYVKQQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAV 313
Query: 189 P 189
P
Sbjct: 314 P 314
>AT1G70210.1 | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 |
chr1:26440015-26441980 FORWARD LENGTH=339
Length = 339
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 11 ENKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWN 68
E W ++LL++ACLSLAAKMEE VP L +F Y F+ K I+ MELLVL+ L+W
Sbjct: 121 ETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWR 180
Query: 69 MDIVTPFAFLHYFVTKLCSESPPSPIF-----SKTIQLIVATMKEVNLMDHKPSVIAAAA 123
+ VTPF F+ +F K+ PS F S ++I++ +KE + +++ PS IAAAA
Sbjct: 181 LRSVTPFDFISFFAYKI----DPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAA 236
Query: 124 TLVALDQKLTIEAVKLKMSSIPQLQL--IEPNDVFGCYILIQRLYEEEKTRGD-----KL 176
L ++ ++ +V S P+ + + CY L++ + E KL
Sbjct: 237 ILCVANELPSLSSVVNPHES-PETWCDGLSKEKIVRCYRLMKAMAIENNRLNTPKVIAKL 295
Query: 177 LHTPNSSPFRSRPIDMTESSQATSSKRRRLT 207
+ +S +RP D + S ++ KRR+L+
Sbjct: 296 RVSVRASSTLTRPSDESSFSSSSPCKRRKLS 326
>AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 |
chr4:16357903-16359304 FORWARD LENGTH=376
Length = 376
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
+K W ++L+S+ACLSLAAK+EE VP L +F E+ Y F+ K IQ MELL+L+TLEW M
Sbjct: 127 DKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKM 186
Query: 70 DIVTPFAFLHYFVTKLCSESPPSPIF-SKTIQLIVATMKEVNLMDHKPSVIAAAATLVAL 128
++TP +F+ + + +L ++ F +K +L+++ + + + + PSV+AAA + +
Sbjct: 187 HLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRII 246
Query: 129 DQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRL 165
+Q + + + + + L L + V CY LI +L
Sbjct: 247 EQVDPFDPLSYQTNLLGVLNLTKEK-VKTCYDLILQL 282
>AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 |
chr3:18565322-18566669 REVERSE LENGTH=361
Length = 361
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 6/155 (3%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
+K W +L ++ACLSLAAK+EE VP L +F E+ Y F+ K IQ MELLVL+TL+W M
Sbjct: 126 DKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRM 185
Query: 70 DIVTPFAFLHYFVTKLCSESPPSPIF-SKTIQLIVATMKEVNLMDHKPSVIAAAATL-VA 127
VTP +F + + + +S F S+ L+++ + + + PSV+A A + V
Sbjct: 186 HPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVI 245
Query: 128 LDQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILI 162
D K+ EAV S + L ++ V CY L+
Sbjct: 246 RDLKMCDEAV--YQSQLMTLLKVDSEKVNKCYELV 278
>AT5G65420.2 | Symbols: CYCD4;1 | CYCLIN D4;1 |
chr5:26142110-26143750 REVERSE LENGTH=242
Length = 242
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
K W ++LL++ACLSLAAK+EE VP L + D + F+ K +Q MELLVL L+W +
Sbjct: 118 GKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRL 177
Query: 70 DIVTPFAFLHYFVTKL--CSESPPSPIFSKTIQLIVATMK 107
+TP +++ YF+ K+ C + P + + S+++Q+I +T K
Sbjct: 178 RAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTK 217
>AT5G67260.1 | Symbols: CYCD3;2 | CYCLIN D3;2 |
chr5:26836313-26837665 FORWARD LENGTH=367
Length = 367
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 12 NKFWAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNM 69
+K W +L+++A LSLAAK+EE VP L + E+ Y F+ K IQ MELL+L+TL+W M
Sbjct: 136 DKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRM 195
Query: 70 DIVTPFAFLHYFVTKLCSESPPSPIFSKTIQ-LIVATMKEVNLMDHKPSVIAAAATLVAL 128
VTP +F + + + S+ F + + L+++ + + M + PSV+A A ++
Sbjct: 196 HPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVF 255
Query: 129 DQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILI 162
++ + V+ + S I L + V CY L+
Sbjct: 256 EELKPCDEVEYQ-SQITTLLKVNQEKVNECYELL 288
>AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691
REVERSE LENGTH=302
Length = 302
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 30/226 (13%)
Query: 3 AINWI---LKSEN----KFWAIRLLSIACLSLAAKMEECNVPGLSEFHWEDYSFQGKVIQ 55
A+N++ L SE+ K W ++L+S++C+SL+AKM + ++ +S+ E F ++I+
Sbjct: 81 AVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRKPDM-SVSDLPVEGEFFDAQMIE 139
Query: 56 NMELLVLTTLEWNMDIVTPFAFLHYFVT--KLCSESP---PSPIFSKTIQLIVATMKEVN 110
ME ++L L+W M VTPF+FL +F++ +L E P + S+T L + +++
Sbjct: 140 RMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDIS 199
Query: 111 LMDHKPSVIAAAATLVALDQKLTIEAVKLKM----SSIPQLQLIEPNDVFGCYILIQRLY 166
++ KPSVIA AA L A + E L+ + I Q + +++ CY IQ
Sbjct: 200 FLEFKPSVIAGAALLFA-----SFELCPLQFPCFSNRINQCTYVNKDELMECYKAIQ--- 251
Query: 167 EEEKTRGDKLLHTPNS-----SPFRSRPIDMTESSQATSSKRRRLT 207
E + G+ T + F S D + + A+SS +RR T
Sbjct: 252 ERDIIVGENEGSTETAVNVLDQQFSSCESDKSITITASSSPKRRKT 297
>AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCLIN D7;1 |
chr5:417087-418553 FORWARD LENGTH=341
Length = 341
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 15 WAIRLLSIACLSLAAKMEECNVPGLSEFHWED--YSFQGKVIQNMELLVLTTLEWNMDIV 72
W + L+++ LS+A+K E P L E E + F + MEL++L LEW ++ V
Sbjct: 121 WMVELVAVTSLSIASKFNEVTTPLLEELEMEGLTHMFHVNTVAQMELIILKALEWRVNAV 180
Query: 73 TPFAFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATLVALDQKL 132
T + F V+K+ I ++ ++ + ++ ++ + PSV+A AA + ++ K+
Sbjct: 181 TSYTFSQTLVSKI-GMVGDHMIMNRITNHLLDVICDLKMLQYPPSVVATAAIWILMEDKV 239
Query: 133 TIEAV 137
E++
Sbjct: 240 CRESI 244
>AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5363034-5365218
FORWARD LENGTH=450
Length = 450
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 4 INWILKSEN-KFWAIRLLSIACLSLAAKMEECNVPGLSEFHW-EDYSFQGKVIQNMELLV 61
I+W L + ++LL I C+ +A+K EE + P + EF + D ++ + ME V
Sbjct: 250 IDWFLHGNYVQRQQLQLLGITCMLIASKYEEISAPRIEEFCFITDNTYTRDQVLEMENQV 309
Query: 62 LTTLEWNMDIVTPFAFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHK-----P 116
L + + TP FL F+ + S SP S ++ + + + E+ L+D+ P
Sbjct: 310 LKHFSFQIYTPTPKTFLRRFL-RAAQASRLSP--SLEVEFLASYLTELTLIDYHFLKFLP 366
Query: 117 SVIAAAATLVA--------------LDQKLTIEAVKLKMSSIPQLQLIEPNDVFGCYILI 162
SV+AA+A +A L+ T +A LK +S+ LQ ++ N GC +
Sbjct: 367 SVVAASAVFLAKWTMDQSNHPWNPTLEHYTTYKASDLK-ASVHALQDLQLN-TKGCPLSA 424
Query: 163 QRL-YEEEKTRGDKLLHTP 180
R+ Y +EK + +L +P
Sbjct: 425 IRMKYRQEKYKSVAVLTSP 443
>AT1G44110.1 | Symbols: CYCA1;1 | Cyclin A1;1 |
chr1:16775035-16777182 REVERSE LENGTH=460
Length = 460
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 17 IRLLSIACLSLAAKMEECNVPGLSEFHW-EDYSFQGKVIQNMELLVLTTLEWNMDIVTPF 75
++LL +AC+ +AAK EE P + EF + D ++ + +ME VL L++ M T
Sbjct: 270 LQLLGVACMMIAAKYEEICAPQVEEFCYITDNTYLKDEVLDMESDVLNYLKFEMTAPTTK 329
Query: 76 AFLHYFVTKL--CSESPPSPIFSKTIQLIVATMKEVNLMDHKPSVIAAAATLVA 127
FL FV E+P + + ++ E ++ H PS++AA+A +A
Sbjct: 330 CFLRRFVRAAHGVHEAPLMQLECMANYIAELSLLEYTMLSHSPSLVAASAIFLA 383
>AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-8817566
FORWARD LENGTH=437
Length = 437
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 28/186 (15%)
Query: 17 IRLLSIACLSLAAKMEECNVPGLSEFHW-EDYSFQGKVIQNMELLVLTTLEWNMDIVTPF 75
++LL I C+ +A+K EE + P L EF + D ++ + +ME+ VL +L + + + T
Sbjct: 249 LQLLGITCMLIASKYEEISAPRLEEFCFITDNTYTRLEVLSMEIKVLNSLHFRLSVPTTK 308
Query: 76 AFLHYFVTKLCSESPPSPIFSKTIQLIVATMKEVNLMDHK-----PSVIAAAATLVA--- 127
FL F+ + S P+ ++ + E+ L ++ PS+IAA+A +A
Sbjct: 309 TFLRRFI-RAAQASDKVPLIE--MEYLANYFAELTLTEYTFLRFLPSLIAASAVFLARWT 365
Query: 128 LDQ-------------KLTIEAVKLKMSSIPQLQLIEPNDVFGCYILIQRLYEEEKTRGD 174
LDQ + A+K + ++ +LQL N I I Y ++K +
Sbjct: 366 LDQSNHPWNQTLQHYTRYETSALKNTVLAMEELQL---NTSGSTLIAIHTKYNQQKFKRV 422
Query: 175 KLLHTP 180
L +P
Sbjct: 423 ATLTSP 428