Miyakogusa Predicted Gene
- Lj1g3v1720150.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1720150.1 tr|D3YBD2|D3YBD2_TRIRP Transcription initiation
factor OS=Trifolium repens PE=4 SV=1,71.73,0,seg,NULL;
TAF4,Transcription initiation factor TFIID component TAF4; RST,RST
domain of plant C-termi,CUFF.27715.1
(921 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43130.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4 | c... 506 e-143
AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 | chr5:173... 500 e-141
AT1G27720.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4B | ... 297 2e-80
>AT5G43130.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4 |
chr5:17315608-17321144 REVERSE LENGTH=823
Length = 823
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 374/951 (39%), Positives = 495/951 (52%), Gaps = 167/951 (17%)
Query: 1 MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDIXXXXXXXXXXXXXXXXNNSFSQSLPK 60
MDPSI KLLE+DEDE+MHSGADV+AFQAALNRDI N+S Q
Sbjct: 1 MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEGSMTTSIPHVTNPGNNHSSRQQFST 60
Query: 61 LPTSSHDNQTDCQNQDPKIAKQ-QEQPSSEMEMKQQGPLMEQQQNVNNPLLSRNQSQD-- 117
D+ + Q Q + Q +EQ S +E + Q L + N P L NQ QD
Sbjct: 61 WKNGIGDSNINVQTQHSLESTQMKEQEGSTLENQHQHDL----KRANEPHLQHNQPQDLH 116
Query: 118 ----------ECPQGQTGPVSHQNSQIQNSEKDTVRKHEAVKTDNPNSESQYAKLQQMSN 167
+ PQ P+S +N +E+ ++ N SESQY KLQ+MS+
Sbjct: 117 RAGQLWENPSQVPQSTGLPISEKNPT----------GNESDRSHNQESESQYMKLQKMSS 166
Query: 168 QQAS-----VNEQSSTQTNRG-KQVPFGXXXXXXXXXXXKDRALQLHTLFNKLKKDEIPK 221
QQA VN + NR KQVPF KDRALQL TL+ +LKK+EIPK
Sbjct: 167 QQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKNEIPK 226
Query: 222 DNFVRLMKGIVGEQMLRLALAKVQLQLKSNPGPPGQQHPVRMPTISSGAAKFNDPHALAQ 281
+ F R MK IVG+QMLR+A++K+Q Q+ N G G Q P
Sbjct: 227 EGFTRHMKDIVGDQMLRMAVSKLQ-QVNYNQGKIGIQAP--------------------- 264
Query: 282 QPQLHQRSINAAADQSHNNSSAVQLKNESAYPTMDINAKKSPELDVQVAPQGLKQGQLPL 341
+ +IN +KS Q P+ + QLP
Sbjct: 265 --------------------------------STEINNQKS-----QSDPRAVHLNQLPS 287
Query: 342 PSSNAVGQETERSSLHIHGLSKQ-QQQHLHFPSAY--GSSGGNYNPF-XXXXXXXXXXLR 397
+S +G SS+ + GL+K Q Q H PS++ ++ G+++ F LR
Sbjct: 288 SASGTLG-----SSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLR 342
Query: 398 PQPHDSHMRQIP-PQSIGLNHVGGATQGSFGTV---KLERQNSYSDPKRMPGGSVSPAVN 453
P HDSHMR + Q +G +GG Q + + K ER +S +DP R+ GG+ S N
Sbjct: 343 PHLHDSHMRHVAHNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQGGATSHFQN 402
Query: 454 NTASQQNLNPWQQSNEQNSGMLSSASYVKREPNDLSTEQQYRHHLSKLHGFPSVNSAKTD 513
+++ N P G SS S+VK+E D S E+ N+A
Sbjct: 403 SSSLPLNSAP---------GQGSSVSHVKQESVDQSFEKN--------------NAASM- 438
Query: 514 QGSGANQGTVNDDFSRGPPASTSMPHTTPASLMPLNSASSSV-AQPGPTVSLSSQIPSNT 572
T N+D + S+ M +TP ++ P +S S S+ Q + +++S+ P T
Sbjct: 439 --------TSNEDLEK---ESSRMVLSTPNNMAPASSVSPSMTTQLDASTTMNSRGPLGT 487
Query: 573 SG---------KKPSHGQKKPVEAXXXXXXXXXXXXXXXXXXLDQSIEQLNDVTAVGGVD 623
S KKPS GQKKP+E +DQSIEQLNDVTAV GV+
Sbjct: 488 SQGGANARMPPKKPSVGQKKPLETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVN 547
Query: 624 LREEEEQLFSGPREDSRVSEASRRVVQEEEESLILQKAPLQKKLTKIMAECGLKGMSNDV 683
LREEEEQLFSG +ED RVSEASRRVV EEEE LILQK PLQ+KL +IMA+ GLK +SNDV
Sbjct: 548 LREEEEQLFSGAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDV 607
Query: 684 EKCLSLCVEERMRGLISNMIRMSKQRVDLEKMRHRTVVTSDVRQQIMAMNTKAREEWEKK 743
E+CLSLCVEERMRGL+S++IR+SKQRVD EK RHRT +TSD+R QI MN K +EEWEKK
Sbjct: 608 ERCLSLCVEERMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKK 667
Query: 744 QAETEKLRKVTDV-EGHSGVDGDREKDEGRNKAIKVNKEVDDKMXXXXXXXXXXXXXXXX 802
QAE EKL+K ++ EG GVD +++K++ R+K +K NKE DDKM
Sbjct: 668 QAEAEKLKKPSESEEGDGGVDSEKDKEDNRSKGVKGNKEDDDKMRTTAANVAARAAVGGD 727
Query: 803 XVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLXXXXXXXXXXXXTKDNQERGKKGPTST 862
KWQ MAE A+QK S S+ KD +KD Q+ G++
Sbjct: 728 DAFLKWQLMAE-ARQK--------SVSEAGKD-GNQKTTSGGGKNSKDRQDGGRRF---- 773
Query: 863 QTSGAARKFGRHNALA-HPRIARSISVKDAIAVLEREPQMSKSSLLYRLYE 912
+ R+ G++ + P++ R+ISVKD +AVLEREPQMSKS+L+YRL +
Sbjct: 774 -SGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLIQ 823
>AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 |
chr5:17315608-17321144 REVERSE LENGTH=852
Length = 852
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 375/975 (38%), Positives = 497/975 (50%), Gaps = 186/975 (19%)
Query: 1 MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDIXXXXXXXXXXXXXXXXNNSFSQSLPK 60
MDPSI KLLE+DEDE+MHSGADV+AFQAALNRDI N+S Q
Sbjct: 1 MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEGSMTTSIPHVTNPGNNHSSRQQFST 60
Query: 61 LPTSSHDNQTDCQNQDPKIAKQ-QEQPSSEMEMKQQGPLMEQQQNVNNPLLSRNQSQD-- 117
D+ + Q Q + Q +EQ S +E + Q L + N P L NQ QD
Sbjct: 61 WKNGIGDSNINVQTQHSLESTQMKEQEGSTLENQHQHDL----KRANEPHLQHNQPQDLH 116
Query: 118 ----------ECPQGQTGPVSHQNSQIQNSEKDTVRKHEAVKTDNPNSESQYAKLQQMSN 167
+ PQ P+S +N +E+ ++ N SESQY KLQ+MS+
Sbjct: 117 RAGQLWENPSQVPQSTGLPISEKNPT----------GNESDRSHNQESESQYMKLQKMSS 166
Query: 168 QQAS-----VNEQSSTQTNRG-KQVPFGXXXXXXXXXXXKDRALQLHTLFNKLKKDEIPK 221
QQA VN + NR KQVPF KDRALQL TL+ +LKK+EIPK
Sbjct: 167 QQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKNEIPK 226
Query: 222 DNFVRLMKGIVGEQMLRLALAKVQLQLKSNPGPPGQQHPVRMPTISSGAAKFNDPHALAQ 281
+ F R MK IVG+QMLR+A++K+Q Q+ N G G Q P
Sbjct: 227 EGFTRHMKDIVGDQMLRMAVSKLQ-QVNYNQGKIGIQAP--------------------- 264
Query: 282 QPQLHQRSINAAADQSHNNSSAVQLKNESAYPTMDINAKKSPELDVQVAPQGLKQGQLPL 341
+ +IN +KS Q P+ + QLP
Sbjct: 265 --------------------------------STEINNQKS-----QSDPRAVHLNQLPS 287
Query: 342 PSSNAVGQETERSSLHIHGLSKQ-QQQHLHFPSAY--GSSGGNYNPF-XXXXXXXXXXLR 397
+S +G SS+ + GL+K Q Q H PS++ ++ G+++ F LR
Sbjct: 288 SASGTLG-----SSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLR 342
Query: 398 PQPHDSHMRQIP-PQSIGLNHVGGATQGSFGTV---KLERQNSYSDPKRMPGGSVSPAVN 453
P HDSHMR + Q +G +GG Q + + K ER +S +DP R+ GG+ S N
Sbjct: 343 PHLHDSHMRHVAHNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQGGATSHFQN 402
Query: 454 NTASQQNLNPWQQSNEQNSGMLSSASYVKREPNDLSTEQQYRHHLSKLHGFPSVNSAKTD 513
+++ N P G SS S+VK+E D S E+ N+A
Sbjct: 403 SSSLPLNSAP---------GQGSSVSHVKQESVDQSFEKN--------------NAASM- 438
Query: 514 QGSGANQGTVNDDFSRGPPASTSMPHTTPASLMPLNSASSSV-AQPGPTVSLSSQIPSNT 572
T N+D + S+ M +TP ++ P +S S S+ Q + +++S+ P T
Sbjct: 439 --------TSNEDLEK---ESSRMVLSTPNNMAPASSVSPSMTTQLDASTTMNSRGPLGT 487
Query: 573 SG---------KKPSHGQKKPVEAXXXXXXXXXXXXXXXXXXLDQSIEQLNDVTAVGGVD 623
S KKPS GQKKP+E +DQSIEQLNDVTAV GV+
Sbjct: 488 SQGGANARMPPKKPSVGQKKPLETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVN 547
Query: 624 LREEEEQLFSGPREDSRVSEASRRVVQEEEESLILQKAPLQKKLTKIMAECGLKGMSNDV 683
LREEEEQLFSG +ED RVSEASRRVV EEEE LILQK PLQ+KL +IMA+ GLK +SNDV
Sbjct: 548 LREEEEQLFSGAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDV 607
Query: 684 EKCLSLCVEERMRGLISNMIRMSKQRVDLEKMRHRTVVTSDVRQQIMAMNTKAREEWEKK 743
E+CLSLCVEERMRGL+S++IR+SKQRVD EK RHRT +TSD+R QI MN K +EEWEKK
Sbjct: 608 ERCLSLCVEERMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKK 667
Query: 744 QAETEKLRKVTDV-EGHSGVDGDREKDEGRNKAIKVNKEVDDKMXXXXXXXXXXXXXXXX 802
QAE EKL+K ++ EG GVD +++K++ R+K +K NKE DDKM
Sbjct: 668 QAEAEKLKKPSESEEGDGGVDSEKDKEDNRSKGVKGNKEDDDKMRTTAANVAARAAVGGD 727
Query: 803 XVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLXXXXXXXXXXXXTKDNQERGKKGPTST 862
KWQ MAE A+QK S S+ KD +KD Q+ G++ +
Sbjct: 728 DAFLKWQLMAE-ARQK--------SVSEAGKD-GNQKTTSGGGKNSKDRQDGGRRFSGTE 777
Query: 863 QTSG------------------------AARKFGRHNALA-HPRIARSISVKDAIAVLER 897
+ G R+ G++ + P++ R+ISVKD +AVLER
Sbjct: 778 SSCGVGIVYRVSSSRFWFAMMSFGFLFAGGRRVGKNQGSSLQPKVVRTISVKDVVAVLER 837
Query: 898 EPQMSKSSLLYRLYE 912
EPQMSKS+L+YRL +
Sbjct: 838 EPQMSKSTLMYRLIQ 852
>AT1G27720.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4B |
chr1:9643351-9647376 REVERSE LENGTH=720
Length = 720
Score = 297 bits (761), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 250/786 (31%), Positives = 368/786 (46%), Gaps = 147/786 (18%)
Query: 158 QYAKLQQMSNQQASVNEQSSTQTN---RGKQVPFGXXXXXXXXXXXKDRALQLHTLFNKL 214
+Y KLQ+MS+++ E++ N R +V K L LH KL
Sbjct: 57 RYMKLQKMSSKETPWVEKTVDPVNHNLRLARVTDLLRTVVDHQPGKKTHCLNLHY---KL 113
Query: 215 KKDEIPKDNFVRLMKGIVGEQMLRLALAKVQLQLKSNPGPPGQQHPVRMPTISSGAAKFN 274
K+ E+ + F+R ++ +VG+Q++R ++++ QLK PG G
Sbjct: 114 KRKELTMEEFMRQLRDLVGDQIIRSVISQLP-QLK--PGNMG------------------ 152
Query: 275 DPHALAQQPQLHQRSINAAADQSHNNSSAVQLKNESAYPTMDINAKKSPELDVQVA-PQG 333
I +H+ S KS E Q + P+
Sbjct: 153 ---------------IKVPGRSNHDKVS------------------KSAEFTAQESDPRE 179
Query: 334 LKQGQLPLPSSNAVGQETERSSLHIHGLSKQQQQHLHFPSA---YGSSGGNYNPFXXXXX 390
+ QL SS G T SS + GL+K +QH+ PS+ + G+ NP+
Sbjct: 180 VHVNQL---SSTTSG--TLNSSTTVQGLNKHPEQHMQLPSSSFHMDTKSGSLNPYPGTNV 234
Query: 391 XXXXXLRPQPHDSHMRQIPP-------QSIGLNHVGGATQGSFGTV---KLERQNSYSDP 440
P S ++P Q++G+ VGG T+ + K ER + P
Sbjct: 235 TS-------PGSSSRAKLPDFQHRENNQNVGIASVGGPTKSTINMTTVPKFERPTFVNGP 287
Query: 441 KRMPGGSVSPAVNNTASQQNLNPWQQS--NEQNSGMLSSASYVKREPNDLSTEQQYRHHL 498
R+ G +S N++ PWQ S + G SS +V+ + D S EQ ++
Sbjct: 288 SRVQDGPISDFPKNSSFPLYSAPWQGSVTKDHTVGPSSSVIHVEHKLIDQSFEQAHKPRY 347
Query: 499 SKLHGFPSVNSAKTDQGSGANQGTVNDDFSR-----GPPASTSMPHTTPASLMPLNSASS 553
G +V + + A + NDD + G ST+ + S+ +S+
Sbjct: 348 LVQQGVTNVPLKQKN----AIPISSNDDLEKQSSKMGLFTSTTSASSVFPSMTTQLDSST 403
Query: 554 SVAQPGPTVSLSSQIPSNTSGKKPSHGQKKPVEAXXXXXXXXXXXXXXXXXXLDQSIEQL 613
V P P+ ++ + K PS GQKKP+EA D+SIE+
Sbjct: 404 MVNMPAPSETIPKIANVTVTPKMPSVGQKKPLEALGSSLPPSRKKQKICGTSSDESIEKF 463
Query: 614 NDVTAVGGVDLREEEEQLF-SGPREDSRVSEASRRVVQEEEESLILQKAPLQKKLTKIMA 672
NDVTAV G++LREEE+QL SGP+++ RVS+A RR+V EEE +LQK PLQ+KLT+IM
Sbjct: 464 NDVTAVSGINLREEEKQLLDSGPKKNDRVSKAYRRLVHGEEERTLLQKIPLQRKLTEIMG 523
Query: 673 ECGLKGMSNDVEKCLSLCVEERMRGLISNMIRMSKQRVDLEKMRHRTVVTSDVRQQIMAM 732
+ GLK + +DVE+CLSLCVEERMRGL+ N+IR+SKQR D EK R+RT +TSD+R++I M
Sbjct: 524 KSGLKHIDHDVERCLSLCVEERMRGLLFNIIRISKQRTDAEKCRNRTFITSDIRKEINEM 583
Query: 733 NTKAREEWEKKQAETEKLRKVTDVEGHSGVDGDREKDEGRNKAIKVNKEVDDKMXXXXXX 792
N K +EEWEKK + EK + + D EK++ R+ +K NK+ +DK
Sbjct: 584 NQKVKEEWEKKHSGEEKNK-----------ENDTEKEDQRSNEVKANKKDEDKERAKAAN 632
Query: 793 XXXXXXXXXXXVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLXXXXXXXXXXXXTKDNQ 852
SKW+ MAE A+Q+ G
Sbjct: 633 VAVRAAVGGDDRFSKWKLMAE-ARQRSSPG------------------------------ 661
Query: 853 ERGKKGPTSTQTSGAARKFGRHNALAHPRIARSISVKDAIAVLEREPQMSKSSLLYRLYE 912
G S + SG +FG++ L P++ RSISVKD IAV+E+EPQMS+S+LLYR+Y
Sbjct: 662 ----PGRNSKKLSGGT-QFGKNQGL--PKVVRSISVKDVIAVVEKEPQMSRSTLLYRVYN 714
Query: 913 KIHSDA 918
+I SD
Sbjct: 715 RICSDV 720