Miyakogusa Predicted Gene

Lj1g3v1686750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1686750.1 tr|G7LG21|G7LG21_MEDTR Protein DCL OS=Medicago
truncatula GN=MTR_8g039170 PE=4 SV=1,39.47,6e-19,seg,NULL; no
description,Copper amine oxidase, N2/N3-terminal; DUF3223,Protein of
unknown function D,CUFF.27678.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46630.1 | Symbols:  | Protein of unknown function (DUF3223) ...   171   3e-43
AT1G45230.1 | Symbols:  | Protein of unknown function (DUF3223) ...   109   1e-24
AT1G45230.2 | Symbols:  | Protein of unknown function (DUF3223) ...   107   5e-24
AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuc...    87   9e-18

>AT3G46630.1 | Symbols:  | Protein of unknown function (DUF3223) |
           chr3:17181138-17182346 REVERSE LENGTH=207
          Length = 207

 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 5/184 (2%)

Query: 7   RRQVLLLRGCFQNH---TAGAVAARHRKWFSAATNSP--SNEAEAEEKVSPSTTFNLREN 61
           R QV ++ G   +H      ++A R + + +  + SP   + A A    SP    + R  
Sbjct: 21  RHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAAAMNVTSPVVDNSWRYE 80

Query: 62  DPDSRKWXXXXXXXXXXXXXXVLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESE 121
           DPD RKW               LLAK+ILHS RY++G+ LD E+EK ++EKLL YHP S+
Sbjct: 81  DPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSK 140

Query: 122 DKIGCGIESIMVDRHPEFRHSKRLFVVRTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRK 181
           DKIGCG++ IMVDRHP+FRHS+ LFVVRTDG WIDFSY  CL++Y+R KYP HAERFIR+
Sbjct: 141 DKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIRE 200

Query: 182 HYHR 185
           H+ R
Sbjct: 201 HFKR 204


>AT1G45230.1 | Symbols:  | Protein of unknown function (DUF3223) |
           chr1:17169874-17171381 REVERSE LENGTH=219
          Length = 219

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 71/105 (67%)

Query: 83  VLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHS 142
           V   + ILHS +Y N   L  E E+ I+E LL YHPE E KIGCGI+ IMV  HP+F  S
Sbjct: 112 VGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESS 171

Query: 143 KRLFVVRTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRKHYHRKK 187
           + +F+VR DG  +DFSY  C++  I+ KYP++A+ FI +H+ +++
Sbjct: 172 RCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRR 216


>AT1G45230.2 | Symbols:  | Protein of unknown function (DUF3223) |
           chr1:17169874-17171381 REVERSE LENGTH=219
          Length = 219

 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 71/105 (67%)

Query: 83  VLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHS 142
           V   + ILHS +Y N   L  E E+ I+E LL YHPE E KIGCGI+ IMV  HP+F  S
Sbjct: 112 VGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESS 171

Query: 143 KRLFVVRTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRKHYHRKK 187
           + +F+VR DG  +DFSY  C++  I+ KYP++A+ FI +H+ +++
Sbjct: 172 RCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRR 216


>AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear
            RNA polymerase D1B | chr2:16715089-16723406 FORWARD
            LENGTH=1976
          Length = 1976

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 60/97 (61%)

Query: 89   ILHSPRYMNGQILDMEEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHSKRLFVV 148
            I+H   Y +G  +  +++  ++EK+L +HP+ E K+G G++ I VD+H  F  S+  FVV
Sbjct: 1753 IMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVV 1812

Query: 149  RTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRKHYHR 185
             TDG   DFSY   L +Y+  KYP  AE FI K++ +
Sbjct: 1813 STDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849