Miyakogusa Predicted Gene

Lj1g3v1686700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1686700.1 tr|Q2HTQ3|Q2HTQ3_MEDTR Cysteine proteinase
OS=Medicago truncatula GN=MTR_1g018840 PE=3
SV=1,65.71,0.0000000000002,seg,NULL,CUFF.27673.1
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43060.1 | Symbols:  | Granulin repeat cysteine protease fami...    62   9e-11
AT1G47128.1 | Symbols: RD21, RD21A | Granulin repeat cysteine pr...    56   4e-09
AT3G19390.1 | Symbols:  | Granulin repeat cysteine protease fami...    49   9e-07

>AT5G43060.1 | Symbols:  | Granulin repeat cysteine protease family
           protein | chr5:17269784-17272117 REVERSE LENGTH=463
          Length = 463

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIKKGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTCC 60
           M RN++  + GKCGIAM ASYPIKKGQN                  C+ Y+SC    TCC
Sbjct: 332 MARNIEAPT-GKCGIAMEASYPIKKGQNPPNPGPSPPSPIKPPT-TCDKYFSCPESNTCC 389

Query: 61  CVYQFGKSCFG 71
           C+Y++GK CFG
Sbjct: 390 CLYKYGKYCFG 400


>AT1G47128.1 | Symbols: RD21, RD21A | Granulin repeat cysteine
           protease family protein | chr1:17283139-17285609 REVERSE
           LENGTH=462
          Length = 462

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIKKGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTCC 60
           M RN+  +S+GKCGIA+  SYPIK G+N                  C+SYY+C    TCC
Sbjct: 331 MARNI-ASSSGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQ-CDSYYTCPESNTCC 388

Query: 61  CVYQFGKSCF 70
           C++++GK CF
Sbjct: 389 CLFEYGKYCF 398


>AT3G19390.1 | Symbols:  | Granulin repeat cysteine protease family
           protein | chr3:6723024-6724768 FORWARD LENGTH=452
          Length = 452

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIK-KGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTC 59
           +ERN+K  S+GKCG+AMMASYP K  G N                 VC+   +C   +TC
Sbjct: 324 LERNIK-ESSGKCGVAMMASYPTKSSGSNPPKPPAPSPV-------VCDKSNTCPAKSTC 375

Query: 60  CCVYQFGKSCF 70
           CC+Y++   C+
Sbjct: 376 CCLYEYNGKCY 386