Miyakogusa Predicted Gene
- Lj1g3v1650160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1650160.1 Non Chatacterized Hit- tr|K3YP74|K3YP74_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016066,41.88,4e-19,DUF3223,Protein of unknown function DUF3223;
no description,Copper amine oxidase, N2/N3-terminal; se,CUFF.27654.1
(225 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223) ... 201 5e-52
AT1G45230.2 | Symbols: | Protein of unknown function (DUF3223) ... 197 5e-51
AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223) ... 129 1e-30
AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuc... 102 2e-22
AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr... 50 9e-07
AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nucl... 50 9e-07
AT5G62440.1 | Symbols: | Protein of unknown function (DUF3223) ... 50 1e-06
>AT1G45230.1 | Symbols: | Protein of unknown function (DUF3223) |
chr1:17169874-17171381 REVERSE LENGTH=219
Length = 219
Score = 201 bits (510), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 92/116 (79%), Positives = 104/116 (89%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+ILE TVPLVGFVR ILHSG Y + DRLSPEHE+TI+E LLP+HPE EKKIGCGIDYI +
Sbjct: 103 KILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMV 162
Query: 169 GYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRSRN 224
G+HP F+ SRC+FIVRKDGE+VDFSYWKCIKGLI+K YPLYADSFILRHFRKR +N
Sbjct: 163 GHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
>AT1G45230.2 | Symbols: | Protein of unknown function (DUF3223) |
chr1:17169874-17171381 REVERSE LENGTH=219
Length = 219
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/116 (78%), Positives = 103/116 (88%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+ILE TVPLVGFVR ILHSG Y + DRLSPEHE+TI+E LLP+HPE EKKIGCGIDYI +
Sbjct: 103 KILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMV 162
Query: 169 GYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRSRN 224
+HP F+ SRC+FIVRKDGE+VDFSYWKCIKGLI+K YPLYADSFILRHFRKR +N
Sbjct: 163 WHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRKRRQN 218
>AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223) |
chr3:17181138-17182346 REVERSE LENGTH=207
Length = 207
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 78/114 (68%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+IL D P+ + ILHS Y G+RL E EK ++EKLLP+HP S+ KIGCG+D+I +
Sbjct: 93 EILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMV 152
Query: 169 GYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRS 222
HPQF SRCLF+VR DG +DFSY KC++ +R YP +A+ FI HF++ S
Sbjct: 153 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRAS 206
>AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear
RNA polymerase D1B | chr2:16715089-16723406 FORWARD
LENGTH=1976
Length = 1976
Score = 102 bits (254), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
++L D P++ +R I+H Y GD +S + + +LEK+L FHP+ E K+G G+D+IT+
Sbjct: 1738 ELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITV 1797
Query: 169 GYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRK------RS 222
H F SRC F+V DG DFSY K + + K YP A+ FI ++F K R
Sbjct: 1798 DKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRD 1857
Query: 223 RN 224
RN
Sbjct: 1858 RN 1859
>AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A |
chr1:23355329-23361126 REVERSE LENGTH=1453
Length = 1453
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 121 VRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITIGYHPQFDRSRCL 180
++ ILHS YE + L+ E ++ +++ +L HP S +KIG G+ I + D S C
Sbjct: 1346 LKRILHS--YEINELLN-ERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGD-SCCF 1401
Query: 181 FIVRKDGELVDFSYWKCIKGLIR 203
+VR DG DFSY KC+ G +
Sbjct: 1402 EVVRIDGTFEDFSYHKCVLGATK 1424
>AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuclear
RNA polymerase D1A | chr1:23355329-23361126 REVERSE
LENGTH=1453
Length = 1453
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 121 VRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITIGYHPQFDRSRCL 180
++ ILHS YE + L+ E ++ +++ +L HP S +KIG G+ I + D S C
Sbjct: 1346 LKRILHS--YEINELLN-ERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGD-SCCF 1401
Query: 181 FIVRKDGELVDFSYWKCIKGLIR 203
+VR DG DFSY KC+ G +
Sbjct: 1402 EVVRIDGTFEDFSYHKCVLGATK 1424
>AT5G62440.1 | Symbols: | Protein of unknown function (DUF3223) |
chr5:25072620-25073917 REVERSE LENGTH=202
Length = 202
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 152 HPESEKKIGCGIDYITIGYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLI 202
H E EKKIG GI + HP + +SRC F+VR+D DFS+ KC+ ++
Sbjct: 113 HSEPEKKIGGGIKTFQVRTHPMW-KSRCFFLVREDDTADDFSFRKCVDQIL 162