Miyakogusa Predicted Gene
- Lj1g3v1650110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1650110.1 Non Chatacterized Hit- tr|I3T4S4|I3T4S4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.25,0,seg,NULL;
Chlorophyll a-b binding protein,Chlorophyll a/b binding protein
domain; no description,Chl,CUFF.27634.1
(266 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 321 4e-88
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 321 4e-88
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 177 5e-45
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 176 1e-44
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 166 1e-41
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 152 2e-37
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 152 2e-37
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 136 2e-32
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 127 7e-30
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 114 8e-26
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 113 1e-25
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 109 2e-24
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 109 2e-24
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 107 9e-24
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 106 1e-23
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 105 4e-23
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 105 4e-23
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 103 1e-22
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 103 1e-22
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 103 1e-22
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 103 2e-22
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 103 2e-22
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 102 3e-22
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 94 1e-19
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 93 2e-19
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 77 1e-14
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 76 2e-14
AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex photos... 59 2e-09
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 59 4e-09
AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex photos... 55 4e-08
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 321 bits (822), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 156/211 (73%), Positives = 176/211 (83%), Gaps = 1/211 (0%)
Query: 57 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVT 116
R TWLPGL+PP YLDG LAGDYGFDPLGLGEDPESL+WYVQAELVH+RFAMLGV GIL T
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105
Query: 117 DLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGS 176
DLLR TG+ +PVW+EAGAVK++F +T+TLI+VQ LLMGFAETKRYMDF+SPGSQAKEGS
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165
Query: 177 -FFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQAS 235
FFGLEA+ E AKD++NA + KLKEIKNGRLAM+A+LG FVQAS
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225
Query: 236 VTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 266
VTH GPIDNLVEHLSNPWHKT+IQTL +S S
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 321 bits (822), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 156/211 (73%), Positives = 176/211 (83%), Gaps = 1/211 (0%)
Query: 57 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVT 116
R TWLPGL+PP YLDG LAGDYGFDPLGLGEDPESL+WYVQAELVH+RFAMLGV GIL T
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105
Query: 117 DLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGS 176
DLLR TG+ +PVW+EAGAVK++F +T+TLI+VQ LLMGFAETKRYMDF+SPGSQAKEGS
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165
Query: 177 -FFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQAS 235
FFGLEA+ E AKD++NA + KLKEIKNGRLAM+A+LG FVQAS
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225
Query: 236 VTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 266
VTH GPIDNLVEHLSNPWHKT+IQTL +S S
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 127/202 (62%), Gaps = 8/202 (3%)
Query: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
WLPGL P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AMLGV G+L+ ++
Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116
Query: 120 RVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFG 179
G+ +P W++AG +Y F ++ TL +++ +L + E +R+ D +PGS +
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ------ 169
Query: 180 LEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHV 239
+ F+ + +E+K KE+ NGRLAM+A LG VQ +VT
Sbjct: 170 -DPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGK 228
Query: 240 GPIDNLVEHLSNPWHKTVIQTL 261
GP +NL++HLS+PWH T++QT
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTF 250
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 129/223 (57%), Gaps = 5/223 (2%)
Query: 36 PAASRAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWY 95
PA SR + R AA RP W PG PP +LDG+L GD+GFDPLGL DP+SL+W
Sbjct: 34 PAVSRPDASVRA---VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWN 90
Query: 96 VQAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMG 155
VQAE+VH R+AMLG GI + + L G+ P W+ AG +Y FT+ TL +V+L+L+G
Sbjct: 91 VQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIG 149
Query: 156 FAETKRYMDFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLK 215
+AE +R+ D I PGS + F + + K +E + K
Sbjct: 150 WAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAK-LKELRTK 208
Query: 216 EIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVI 258
EIKNGRLAM+A++G + Q T GPIDNL HL++P H T+
Sbjct: 209 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 251
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 130/225 (57%), Gaps = 5/225 (2%)
Query: 40 RAGTTPRCRQICAAMQP-RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQA 98
RAG +C + P RP W PG PP +LDG+L GD+GFDPLGLG DP++L+W+ QA
Sbjct: 49 RAGK--EVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQA 106
Query: 99 ELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAE 158
EL+H+R+AML V GI++ + L G + W++AG+ +Y F ++ TL + Q++LMG+AE
Sbjct: 107 ELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAE 165
Query: 159 TKRYMDFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIK 218
+R+ D I PGS E + + + + + + KEIK
Sbjct: 166 GRRWADLIKPGSVDIEPK-YPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIK 224
Query: 219 NGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLAS 263
NGRLAM+A LG QA+ T PI+NL+ HL++P H V S
Sbjct: 225 NGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 129/239 (53%), Gaps = 25/239 (10%)
Query: 40 RAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESL------R 93
+A TP +Q RP W +YLDG+L GDYGFDPLGL DPE R
Sbjct: 40 KAAATPPVKQGAN----RPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPR 94
Query: 94 WYVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPV-----WFEAGAV----KYEF-TNT 143
W E+++ RFAMLG G + ++L GL IP WF+ G + Y + +
Sbjct: 95 WLAYGEIINGRFAMLGAAGAIAPEILGKAGL--IPAETALPWFQTGVIPPAGTYTYWADN 152
Query: 144 QTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXX-XXX 202
TL ++++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 153 YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGF 211
Query: 203 AKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTL 261
KD K+ +E KLKE+KNGRLAM+AILG F+Q VT VGP NL++HL++P + V+ +L
Sbjct: 212 GKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 129/239 (53%), Gaps = 25/239 (10%)
Query: 40 RAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESL------R 93
+A TP +Q RP W +YLDG+L GDYGFDPLGL DPE R
Sbjct: 40 KAAATPPVKQGAN----RPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPR 94
Query: 94 WYVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPV-----WFEAGAV----KYEF-TNT 143
W E+++ RFAMLG G + ++L GL IP WF+ G + Y + +
Sbjct: 95 WLAYGEIINGRFAMLGAAGAIAPEILGKAGL--IPAETALPWFQTGVIPPAGTYTYWADN 152
Query: 144 QTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXX-XXX 202
TL ++++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 153 YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGF 211
Query: 203 AKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTL 261
KD K+ +E KLKE+KNGRLAM+AILG F+Q VT VGP NL++HL++P + V+ +L
Sbjct: 212 GKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 73 TLAGDYGFDPLGLGEDPESL------RWYVQAELVHARFAMLGVFGILVTDLLRVTGL-- 124
+L GDYGFDPLGL DPE RW E+++ RFAMLG G + ++L GL
Sbjct: 14 SLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 125 --SKIPVWFEAGAV----KYEF-TNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSF 177
+ +P WF+ G + Y + + TL ++++ LMGFAE +R D+ +PGS K+ F
Sbjct: 73 AETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YF 130
Query: 178 FGLEASFEXXXXXXXXXXXXXX-XXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQASV 236
GLE KD K+ +E KLKE+KNGRLAM+AILG F+Q V
Sbjct: 131 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLV 190
Query: 237 THVGPIDNLVEHLSNPWHKTVIQTL 261
T VGP NL++HL++P + V+ +L
Sbjct: 191 TGVGPYQNLLDHLADPVNNNVLTSL 215
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 106/206 (51%), Gaps = 28/206 (13%)
Query: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
W+PG PAYLDG+ GD+GFDPLGLGE P +L Y ++EL+H R+AML V GILV + L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 120 RVTGLSKIPVW--FEAGAVKY-----EFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQA 172
K W G Y + T++ ++ L + F E +R M+ +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKY 167
Query: 173 KEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFV 232
G+F L S KD K E K+KEIKNGRLA++A +G V
Sbjct: 168 PGGAFDPLGYS--------------------KDPKKLEELKVKEIKNGRLALLAFVGFCV 207
Query: 233 QASV-THVGPIDNLVEHLSNPWHKTV 257
Q S GP++NL HL++PWH +
Sbjct: 208 QQSAYPGTGPLENLATHLADPWHNNI 233
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 108/218 (49%), Gaps = 53/218 (24%)
Query: 51 CAAMQPRPTWLPGLD------PPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHAR 104
AA QP+ +W+P + P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R
Sbjct: 48 AAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGR 107
Query: 105 FAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFT--NTQTLIIVQLLLMGFAETKRY 162
+AM V GI V +G++ WFEAGA + +L+ QLLLMG+ E+KR+
Sbjct: 108 WAMAAVLGIFVGQAW--SGVA----WFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRW 161
Query: 163 MDFISPGSQAKE-----------------------GSFF---GLEASFEXXXXXXXXXXX 196
+DF +P SQ+ E G FF GL
Sbjct: 162 VDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGK------------- 208
Query: 197 XXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQA 234
D + KL EIK+ RLAMVA+L + +A
Sbjct: 209 NRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEA 246
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 32/211 (15%)
Query: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
P YL+G +AGDYG+DP GLG+ PE+ Y EL+HAR+AMLG G ++ + L G +
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 127 IP--VWFEAGAVKYEFT-----------NTQTLIIVQLLLMGFAETKRYMDFISPGSQAK 173
P VWF+ GA+ + N ++ +++L+G AE R + + +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLH 201
Query: 174 EGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 233
G F AKD + K+KEIKNGRLAM A+LG F+Q
Sbjct: 202 PGGPF-------------------DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQ 242
Query: 234 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASS 264
A VT GP++NL +HLS+P+ ++ +A +
Sbjct: 243 AYVTGEGPVENLAKHLSDPFGNNLLTVIAGT 273
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 117/270 (43%), Gaps = 78/270 (28%)
Query: 48 RQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGE-------------------- 87
++ + RP W PG P YLDG+L GDYGFDP GLG+
Sbjct: 43 KKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNL 102
Query: 88 ------------DPES-----------LRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
DP+S L+ + + EL+H R+AML G + + L TG+
Sbjct: 103 YGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV 160
Query: 125 SKIPVWFEAGAVKYEFTNT----------QTLIIVQLLLMGFAETKRYMDFISPGSQAKE 174
+ W +AG V+ ++ TLI +++L++G+ E +R + S
Sbjct: 161 T----WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPG 216
Query: 175 GSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQA 234
G FF A D + +L EIK+ RLAMV LG VQA
Sbjct: 217 GKFF-------------------DPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQA 257
Query: 235 SVTHVGPIDNLVEHLSNPWHKTVIQTLASS 264
+ T GP++N HLS+P H T+I T +SS
Sbjct: 258 AATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 34/231 (14%)
Query: 55 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 112
+ RP W + D P YL G L GDYGFD GLG+D + Y E++HAR+AML G
Sbjct: 109 KERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALG 168
Query: 113 ILVTDLLRVTGLSKI--PVWFEAGAVKYE-------------FTNTQTLIIV---QLLLM 154
L+ ++ +TG PVW+ G K + +Q +I++ Q+LLM
Sbjct: 169 ALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLM 228
Query: 155 GFAETKRYMDFISPGSQAKE--GSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARES 212
E RY G +A E G + + ++ ++D +
Sbjct: 229 VGPEYARYC-----GIEALEPLGIYLPGDINYP-------GGTLFDPLNLSEDPVAFEDL 276
Query: 213 KLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLAS 263
K+KEIKNGRLAMVA LG + QA+ T GP+ NLV+H+S+P H +I L +
Sbjct: 277 KVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 102/204 (50%), Gaps = 36/204 (17%)
Query: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLR--VTGL 124
P+YL G GDYG+D GL DPE+ E++H R+AMLG FG + ++L+ V
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 123
Query: 125 SKIPVWFEAGAVKY-----------EFTNTQTLIIV---QLLLMGFAETKRY--MDFISP 168
K PVWF+AG+ + + Q+++ V Q++LMG E R +D +
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGE 183
Query: 169 GSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAIL 228
G+ G + A D E K+KEIKNGRLAM ++
Sbjct: 184 GNDLYPGGQY------------------FDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 225
Query: 229 GIFVQASVTHVGPIDNLVEHLSNP 252
G FVQA VT GP++NL++HL NP
Sbjct: 226 GFFVQAIVTGKGPLENLLDHLDNP 249
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 114/261 (43%), Gaps = 78/261 (29%)
Query: 57 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRW---------------------- 94
RP W PG P +LDG+L GDYGFDP GLG+ E L++
Sbjct: 55 RPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRT 114
Query: 95 ---------------------YVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEA 133
+ + EL+H R+AML G L + L TG++ W +A
Sbjct: 115 EAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGVT----WQDA 168
Query: 134 GAVKYEFTNT----------QTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEAS 183
G V+ ++ TLI +++L++G+ E +R + S G FF
Sbjct: 169 GKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFF----- 223
Query: 184 FEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPID 243
A D + + +L EIK+ RLAMVA LG VQA+ T GP++
Sbjct: 224 --------------DPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 269
Query: 244 NLVEHLSNPWHKTVIQTLASS 264
N HLS+P H T+I T +SS
Sbjct: 270 NWATHLSDPLHTTIIDTFSSS 290
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 49/212 (23%)
Query: 65 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
+PP+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 125 S-KIPVWFEAGAVKY-----------EFTNTQTLIIV---QLLLMGFAETKRYM------ 163
VWF+AG+ + + Q+++ + Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 182
Query: 164 ---DFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNG 220
D + PG GSF L A D + E K+KE+KNG
Sbjct: 183 EAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNG 217
Query: 221 RLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
RLAM ++ G FVQA VT GP++NL +HL++P
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 105/212 (49%), Gaps = 49/212 (23%)
Query: 65 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
+PP+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 125 S-KIPVWFEAGAVKY-----------EFTNTQTLIIV---QLLLMGFAETKRYM------ 163
VWF+AG+ + + Q+++ + Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 183
Query: 164 ---DFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNG 220
D + PG GSF L A D + E K+KE+KNG
Sbjct: 184 EAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNG 218
Query: 221 RLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
RLAM ++ G FVQA VT GP++NL +HL++P
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 50/221 (22%)
Query: 57 RPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGIL 114
RP +L + P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G
Sbjct: 54 RPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCT 113
Query: 115 VTDLLRVTGLS-KIPVWFEAGAVKY-----EFTNTQTLI---------IVQLLLMGFAET 159
++L G+ VWF+AG+ + ++ LI VQ++LMGF E
Sbjct: 114 FPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEG 173
Query: 160 KRY--------MDFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARE 211
R +D + PG G+F L A+D + E
Sbjct: 174 YRIGGGPLGEGLDPLYPG-----GAFDPLN--------------------LAEDPEAFSE 208
Query: 212 SKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
K+KE+KNGRLAM ++ G FVQA VT GPI+NL +HL++P
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 104/209 (49%), Gaps = 48/209 (22%)
Query: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLS- 125
P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G ++L G+
Sbjct: 66 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKF 125
Query: 126 KIPVWFEAGAVKY-----EFTNTQTLI---------IVQLLLMGFAETKRY--------M 163
VWF+AG+ + ++ LI VQ++LMGF E R +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGL 185
Query: 164 DFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLA 223
D + PG G+F L A+D + E K+KE+KNGRLA
Sbjct: 186 DPLYPG-----GAFDPLN--------------------LAEDPEAFSELKVKELKNGRLA 220
Query: 224 MVAILGIFVQASVTHVGPIDNLVEHLSNP 252
M ++ G FVQA VT GPI+NL +HL++P
Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 49/212 (23%)
Query: 65 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
+ P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 125 S-KIPVWFEAGAVKYE-----------FTNTQTLIIV---QLLLMGFAETKRYM------ 163
VWF+AG+ + + Q+++ + Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184
Query: 164 ---DFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNG 220
D + PG GSF L A D + E K+KE+KNG
Sbjct: 185 EAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNG 219
Query: 221 RLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
RLAM ++ G FVQA VT GPI+NL +HL++P
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 49/212 (23%)
Query: 65 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
+ P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 125 S-KIPVWFEAGAVKYE-----------FTNTQTLIIV---QLLLMGFAETKRYM------ 163
VWF+AG+ + + Q+++ + Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184
Query: 164 ---DFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNG 220
D + PG GSF L A D + E K+KE+KNG
Sbjct: 185 EAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNG 219
Query: 221 RLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
RLAM ++ G FVQA VT GPI+NL +HL++P
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 49/212 (23%)
Query: 65 DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGL 124
+ P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 125 S-KIPVWFEAGAVKYE-----------FTNTQTLIIV---QLLLMGFAETKRYM------ 163
VWF+AG+ + + Q+++ + Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 184
Query: 164 ---DFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNG 220
D + PG GSF L A D + E K+KE+KNG
Sbjct: 185 EAEDLLYPG-----GSFDPL--------------------GLATDPEAFAELKVKELKNG 219
Query: 221 RLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
RLAM ++ G FVQA VT GPI+NL +HL++P
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 50/221 (22%)
Query: 57 RPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGIL 114
RP +L + P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G
Sbjct: 55 RPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCT 114
Query: 115 VTDLLRVTGLS-KIPVWFEAGAVKY-----------EFTNTQTLIIV---QLLLMGFAET 159
++L G+ VWF+AG+ + + Q+++ + Q++LMGF E
Sbjct: 115 FPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEG 174
Query: 160 KRY--------MDFISPGSQAKEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARE 211
R +D + PG G+F L A+D + E
Sbjct: 175 YRIGGGPLGEGLDPLYPG-----GAFDPLN--------------------LAEDPEAFSE 209
Query: 212 SKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNP 252
K+KE+KNGRLAM ++ G FVQA VT GPI+NL +H+++P
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 250
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 90/199 (45%), Gaps = 48/199 (24%)
Query: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
W+PG PAYLDG+ GD+GFDPLGLGE P +L Y ++EL+H R+AML V GILV + L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 120 RVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFG 179
K W Q + + G T ++F++ + K
Sbjct: 108 GYGNWVKAQEW-------AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFELK------ 154
Query: 180 LEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQASV-TH 238
K+IK NGRLA++A +G VQ S
Sbjct: 155 -----------------------VKEIK-----------NGRLALLAFVGFCVQQSAYPG 180
Query: 239 VGPIDNLVEHLSNPWHKTV 257
GP++NL HL++PWH +
Sbjct: 181 TGPLENLATHLADPWHNNI 199
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 82/169 (48%), Gaps = 27/169 (15%)
Query: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
W+PG PAYLDG+ GD+GFDPLGLGE P +L Y ++EL+H R+AML V GILV + L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 120 RVTGLSKIPVW--FEAGAVKY-----EFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQA 172
K W G Y + T++ ++ L + F E +R M+ +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKY 167
Query: 173 KEGSFFGLEASFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGR 221
G+F L S KD K E K+KEIKNG+
Sbjct: 168 PGGAFDPLGYS--------------------KDPKKLEELKVKEIKNGK 196
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 47/71 (66%)
Query: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
W+PG PAYLDG+ GD+GFDPLGLGE P +L Y ++EL+H R+AML V GILV + L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 120 RVTGLSKIPVW 130
K W
Sbjct: 108 GYGNWVKAQEW 118
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 81/243 (33%)
Query: 57 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRW---------------------- 94
R W PG +PP +LDG++ GD GFDP GLG+ E L++
Sbjct: 56 RLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQ 115
Query: 95 ---------------------YVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEA 133
+ + EL+H R+AMLG G + + L TG++ W +A
Sbjct: 116 ESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEAL--TGIA----WQDA 169
Query: 134 GAVKY-----------EFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEA 182
G V+ F+ T TLI +++L++G+ E +R + + P + G +F
Sbjct: 170 GKVELVEGSSYLGQPLPFSLT-TLIWIEVLVVGYIEFQRNSE-LDPEKRIYPGGYF---- 223
Query: 183 SFEXXXXXXXXXXXXXXXXXAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGPI 242
A D + KL EIK+ RLAMVA L +QA+ T GP+
Sbjct: 224 ---------------DPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPV 268
Query: 243 DNL 245
L
Sbjct: 269 SFL 271
>AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227
Length = 227
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 49/127 (38%)
Query: 53 AMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGE------------------------- 87
+ RP W PG P YLDG+L GDYGFDP GLG+
Sbjct: 48 VISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVI 107
Query: 88 -------DPES-----------LRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPV 129
DP+S L+ + + EL+H R+AML G + + L TG++
Sbjct: 108 GTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGVT---- 161
Query: 130 WFEAGAV 136
W +AG V
Sbjct: 162 WQDAGKV 168
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 210 RESKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTV 257
+E + KEIKNGRLAM+A++G + Q T GPIDNL HL++P H T+
Sbjct: 119 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 166
>AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16746545 FORWARD
LENGTH=185
Length = 185
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 49/132 (37%)
Query: 57 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRW---------------------- 94
R W PG +PP +LDG++ GD GFDP GLG+ E L++
Sbjct: 56 RLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQ 115
Query: 95 ---------------------YVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEA 133
+ + EL+H R+AMLG G + + L TG++ W +A
Sbjct: 116 ESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEAL--TGIA----WQDA 169
Query: 134 GAVKYEFTNTQT 145
G V+ N
Sbjct: 170 GKVESSQKNMHA 181