Miyakogusa Predicted Gene

Lj1g3v1650100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1650100.1 Non Chatacterized Hit- tr|D7LE70|D7LE70_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,50.43,2e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL,TC62021.path1.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26570.1 | Symbols: WEB1 | Plant protein of unknown function ...    71   2e-13
AT4G33390.1 | Symbols:  | Plant protein of unknown function (DUF...    57   3e-09
AT5G42880.1 | Symbols:  | Plant protein of unknown function (DUF...    49   1e-06

>AT2G26570.1 | Symbols: WEB1 | Plant protein of unknown function
           (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807
          Length = 807

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 69/109 (63%), Gaps = 15/109 (13%)

Query: 10  GKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDRAHGAASPAH 69
           GKLGVEQELRKWRAE+EQ+RKAG+   GV N  K+ + SFEG K     +    A+SP+ 
Sbjct: 710 GKLGVEQELRKWRAEHEQKRKAGD---GV-NTEKNLKESFEGGKMEQSPEAVVYASSPS- 764

Query: 70  NMSSPEAYEHEGNDENGSS--SPELKHGKKKKRSLFPRVLMFFARRKTH 116
                E+Y   G +EN  +  SP+ K  KKKK+  FPR  MF +++K+H
Sbjct: 765 -----ESY---GTEENSETNLSPQTKSRKKKKKLSFPRFFMFLSKKKSH 805


>AT4G33390.1 | Symbols:  | Plant protein of unknown function
           (DUF827) | chr4:16075282-16077706 FORWARD LENGTH=779
          Length = 779

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 30/107 (28%)

Query: 10  GKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDRAHGAASPAH 69
           GKLGVEQELRKWR  +E++RK G S HG     KS +GS E   ET+             
Sbjct: 702 GKLGVEQELRKWREVSEKKRKNG-SSHG-----KSIQGSKEKEAETSV------------ 743

Query: 70  NMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFPRVLMFFARRKTH 116
                       N+   +  P++   KKKK+ LFPR  MF  ++K+H
Sbjct: 744 -----------SNETETNPIPQVNPVKKKKK-LFPRFFMFLMKKKSH 778


>AT5G42880.1 | Symbols:  | Plant protein of unknown function
           (DUF827) | chr5:17191758-17194091 FORWARD LENGTH=751
          Length = 751

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 59/110 (53%), Gaps = 6/110 (5%)

Query: 10  GKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDRAHGAASPAH 69
           GKLG+EQELRKWR+EN +RR    +  G   +    R S EG  + N F ++   A    
Sbjct: 648 GKLGMEQELRKWRSENGKRR----TDEGREPEKSPTRSSTEGRNKENGFGQSKSFAF-GE 702

Query: 70  NMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFPRVLMFFARRKTHSAK 119
             SS           N + +PE    KKKK SLFP+V MF +R+K+HS K
Sbjct: 703 QGSSSNNTGGSTTTNNNNLTPE-TKKKKKKLSLFPKVFMFLSRKKSHSHK 751