Miyakogusa Predicted Gene

Lj1g3v1649020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1649020.1 Non Chatacterized Hit- tr|I3SCU0|I3SCU0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,76.75,0,B3,B3 DNA
binding domain; no description,DNA-binding pseudobarrel domain; B3 DNA
binding domain,B3 D,CUFF.27633.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor fam...   227   4e-60
AT3G19184.1 | Symbols:  | AP2/B3-like transcriptional factor fam...   197   7e-51
AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...   146   1e-35

>AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:17122171-17124177 FORWARD LENGTH=211
          Length = 211

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 150/226 (66%), Gaps = 26/226 (11%)

Query: 3   AKYEESRRKRLEENKKRMEALNLPQLSQALRNSPSPKPSPLKQVK-SRTIQKDLVVVRRS 61
            KYEE R KR+EENKKRMEALNLP+LSQ L NS S K SP+K+    RT +K +V V+R 
Sbjct: 7   TKYEEFRLKRVEENKKRMEALNLPKLSQIL-NSTSVKISPMKKRSIPRTPEKKMVDVKR- 64

Query: 62  GRVANMPAPVYKEILIDSVKIPRIRRAYTNTSKYRDYSNRVYASMEDREEAMEKADKLLE 121
                             V I R         K RD  NRVY S E R+EA+ +A+K  +
Sbjct: 65  ------------------VHIQR-----RGVGKKRDLLNRVYVSEEIRDEAISRANKFQD 101

Query: 122 DLGSDHPAFIKSMLQSHVTGGFWLGLPCHFCIDNLPKQDEMITLIDEDGDEYPTVYLARK 181
           +LGS +P+F+KSMLQSHV+GGFWLGLP  FC  +L   D +ITLIDE+G+EY T+YLARK
Sbjct: 102 ELGSGYPSFVKSMLQSHVSGGFWLGLPVQFCKSHLGLHDGVITLIDEEGEEYETIYLARK 161

Query: 182 KGLSGGWRGFAIAHDLADGDALIFQLTNRSTFKVYIIRVDSPSEDT 227
            GLSGGW GFA+AH+LA GD L+F+L  R+ FKVYI RV S  E +
Sbjct: 162 NGLSGGWMGFAVAHNLAYGDTLVFELVRRTAFKVYITRVGSCGESS 207


>AT3G19184.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6637555-6639035 FORWARD LENGTH=277
          Length = 277

 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 147/221 (66%), Gaps = 11/221 (4%)

Query: 5   YEESRRKRLEENKKRMEALNLPQLSQALR----NSPSPKPSPLKQVKSRTIQKDLVVVRR 60
           YE+ R  R+EENKKRM  LNL +L+Q+LR    +S S KPSP K    R I  D   VRR
Sbjct: 8   YEQIRLNRVEENKKRMGELNLNKLAQSLRVSSSSSSSSKPSPAKPRTMR-IPVDFSEVRR 66

Query: 61  SGRVANMPAPVYKEILIDSVKIPRIRRAYTNTSKYRDYSNRVYASMEDREEAMEKADKLL 120
           S R A  P P YKE  ++ ++          +S+ RD  NRVYAS + R  A ++A+KL 
Sbjct: 67  SSR-AKGPPPSYKEFGLEPLER-----RPRRSSRRRDLLNRVYASDDARMYAFDRAEKLQ 120

Query: 121 EDLGSDHPAFIKSMLQSHVTGGFWLGLPCHFCIDNLPKQDEMITLIDEDGDEYPTVYLAR 180
             L S++ +F K MLQSHVTGGFWLGLP  FC  ++PK+D ++TL+DE+ +E    YLA+
Sbjct: 121 SSLDSEYASFTKPMLQSHVTGGFWLGLPLPFCKAHMPKRDVIMTLVDEEEEESQAKYLAQ 180

Query: 181 KKGLSGGWRGFAIAHDLADGDALIFQLTNRSTFKVYIIRVD 221
           K GLSGGWRGFAI H L DGDA++F L  R+TFKVYIIRV+
Sbjct: 181 KNGLSGGWRGFAIDHQLVDGDAVVFHLIARTTFKVYIIRVN 221


>AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:23567338-23568670 FORWARD LENGTH=273
          Length = 273

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 131/229 (57%), Gaps = 23/229 (10%)

Query: 1   MVAKYEESRRKRLEENKKRMEA--LNLPQLSQALRNSPSPKPSPLKQVKSRTIQKDLVVV 58
           M   YEE+R+ RL+EN KR ++  + LPQ               L+Q   + I K L+  
Sbjct: 1   MAMAYEEARKLRLQENHKRFQSNFVALPQFQL------------LQQRNHKPIDKALLAT 48

Query: 59  ---RRSGRVANMPAPVYKEILIDSVKIPRIRRAYTNTSKYRDYSNR-----VYASMEDRE 110
              RRS RV  + +    ++++D+ +   +RR+  ++S +  Y +R      +AS E++ 
Sbjct: 49  AEPRRSSRVRTVISSYRDDVVVDTGRTSNLRRS-RHSSTWATYISRPLHECKFASYEEKV 107

Query: 111 EAMEKADKLLEDLGSDHPAFIKSMLQSHVTGGFWLGLPCHFCIDNLPKQDEMITLIDEDG 170
            A + A+K    L S HP F+KSM++SHV   FWLGLP  FC DN P++   I L DE+G
Sbjct: 108 GAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETMEIELEDEEG 167

Query: 171 DEYPTVYLARKKGLSGGWRGFAIAHDLADGDALIFQLTNRSTFKVYIIR 219
           + Y  VY+ R+ GLSGGW+ FA+ H L DGDAL+F+L     FK+Y+ +
Sbjct: 168 EVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFK 216