Miyakogusa Predicted Gene
- Lj1g3v1648780.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1648780.2 tr|D7KAU1|D7KAU1_ARALL ATRBP47C OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_473892 PE=4
SV=1,26.49,0.0000000004,seg,NULL; no description,Nucleotide-binding,
alpha-beta plait; RRM_1,RNA recognition motif domain; R,CUFF.27617.2
(266 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 321 4e-88
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 316 1e-86
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 308 3e-84
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 303 6e-83
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 242 2e-64
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 242 2e-64
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 235 2e-62
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 224 6e-59
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 222 2e-58
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 200 7e-52
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 185 3e-47
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 108 3e-24
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 107 6e-24
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 107 1e-23
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 107 1e-23
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 105 3e-23
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 87 1e-17
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 82 4e-16
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 82 4e-16
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 79 3e-15
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 79 3e-15
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 77 9e-15
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 75 5e-14
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 74 1e-13
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 73 2e-13
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 73 2e-13
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 6e-13
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 8e-13
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 66 2e-11
AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 66 2e-11
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 62 3e-10
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 61 7e-10
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 60 2e-09
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 59 2e-09
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 5e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 5e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 8e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 8e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 58 8e-09
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 8e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 8e-09
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 56 2e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 56 2e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 56 3e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 56 3e-08
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 3e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 55 3e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 55 4e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 2e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 2e-07
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 2e-07
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 2e-07
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 2e-07
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 3e-07
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 52 3e-07
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 8e-07
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 8e-07
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 1e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 1e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 50 2e-06
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 50 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 50 2e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 50 2e-06
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 321 bits (822), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 160/222 (72%), Positives = 179/222 (80%), Gaps = 3/222 (1%)
Query: 3 MPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAK 61
MPNT+QPFRLNWA+FSTG+KR +N PDLSIFVGDLA DV+D +LHETF+ KYPSVKAAK
Sbjct: 171 MPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAK 230
Query: 62 VVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXX 121
VV DANTGRSKGYGFVRFGD+NER++AM EMNGV CSSR MRIG ATPRK
Sbjct: 231 VVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 290
Query: 122 XXXXXXXEAESN--NTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN 179
+E + NTTIFVGGLD +V EDL+QPFS++GEIVSVKIPVGKGCGFVQF N
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVN 350
Query: 180 RNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPW 221
R NAEEAL+KLNGT IGKQTVRLSWGRNPANK R +G+ W
Sbjct: 351 RPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQW 392
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 24/197 (12%)
Query: 18 STGDKRSD--NVPDLSIFVGDLAGDVTDTMLHETFAN-KYPSVKAAKVVFDANTGRSKGY 74
S G+K + N + +I+VGDL + + L+ F + + + + KV+ + + G S+GY
Sbjct: 89 SRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGY 148
Query: 75 GFVRFGDDNERSQAMNEMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAES 132
GFV F + + + E NG + +P R+ A+ E
Sbjct: 149 GFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWAS------------FSTGEKRLENNG 196
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEE 185
+ +IFVG L P+V+ L + FS+ Y + + K+ + KG GFV+F + N +
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 186 ALQKLNGTTIGKQTVRL 202
A+ ++NG + +R+
Sbjct: 257 AMTEMNGVKCSSRAMRI 273
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 178/222 (80%), Gaps = 3/222 (1%)
Query: 3 MPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAK 61
MPNT+QPFRLNWA+FSTG+KR +N PDLSIFVGDL+ DV+D +LHETF+ KYPSVKAAK
Sbjct: 169 MPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAK 228
Query: 62 VVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXX 121
VV DANTGRSKGYGFVRFGD+NER++AM EMNGV CSSR MRIG ATPRK
Sbjct: 229 VVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
Query: 122 XXXXXXXEAESN--NTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN 179
E + NTTIFVGGLD +V EDL+QPF+++GEIVSVKIPVGKGCGFVQF N
Sbjct: 289 MPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVN 348
Query: 180 RNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPW 221
R NAEEAL+KLNGT IGKQTVRLSWGRNPANK R +G+ W
Sbjct: 349 RPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQW 390
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 18 STGDKRSD--NVPDLSIFVGDLAGDVTDTMLHETFAN-KYPSVKAAKVVFDANTGRSKGY 74
S G+K + N + +I+VGDL + + L+ +FA+ + + KV+ + N G S+GY
Sbjct: 87 SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGY 146
Query: 75 GFVRFGDDNERSQAMNEMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAES 132
GFV F + + + E NG + +P R+ A+ E
Sbjct: 147 GFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS------------FSTGEKRLENNG 194
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEE 185
+ +IFVG L P+V+ L + FS+ Y + + K+ + KG GFV+F + N +
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 186 ALQKLNGTTIGKQTVRL 202
A+ ++NG + +R+
Sbjct: 255 AMTEMNGVKCSSRAMRI 271
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 147/236 (62%), Positives = 182/236 (77%), Gaps = 16/236 (6%)
Query: 2 LMPNTEQPFRLNWATFSTGDKRS-DNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAA 60
+MPN++QPFR+NWA+FSTG+KR+ +N PDLS+FVGDL+ DVTD +LHETF+++YPSVK+A
Sbjct: 173 VMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSA 232
Query: 61 KVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXX 120
KVV D+NTGRSKGYGFVRFGD+NERS+A+ EMNG YCS+R MR+G ATP++
Sbjct: 233 KVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHS 292
Query: 121 XXXXX--------------XXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKI 166
+ ES N TIFVGG+DP+V EDLRQPFSQ+GE+VSVKI
Sbjct: 293 SQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI 352
Query: 167 PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPWN 222
PVGKGCGFVQFA+R +AE+A++ LNGT IGK TVRLSWGR+P NK +RGD G WN
Sbjct: 353 PVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWN 407
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
+++VGDL + +T LH F++ V + KV+ + T +S+GYGFV F + +
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHT-GEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESN--NTTIFVGGLDPNV 146
+G S +P RI A+ A N + ++FVG L P+V
Sbjct: 168 NYSGSVMPNSDQPFRINWAS--------------FSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 147 NAEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQT 199
L + FS +Y + S K+ + KG GFV+F + N AL ++NG +
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQ 273
Query: 200 VRL 202
+R+
Sbjct: 274 MRV 276
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 303 bits (777), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 152/232 (65%), Positives = 176/232 (75%), Gaps = 11/232 (4%)
Query: 1 MLMPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
+ MPN EQPFRLNWA+FSTG+KR S+N PDLSIFVGDLA DV+D +L ETFA +YPSVK
Sbjct: 183 VTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKG 242
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXX 119
AKVV D+NTGRSKGYGFVRFGD+NERS+AM EMNG +CSSR MR+G ATP++
Sbjct: 243 AKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQN 302
Query: 120 XXXXXX---------XXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGK 170
+ ESNN+TIFVGGLD +V EDL QPFS +GE+VSVKIPVGK
Sbjct: 303 GSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
Query: 171 GCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPWN 222
GCGFVQFANR +AEEA+ LNGT IGK TVRLSWGR+P NK +R D G+ WN
Sbjct: 363 GCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWN 413
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 26/183 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
+++VGDL + +T LH F++ V + KV+ + T +S+GYGFV F + +A+
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHT-NEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESN--NTTIFVGGLDPNV 146
+GV + +P R+ A+ A N + +IFVG L P+V
Sbjct: 179 SFSGVTMPNAEQPFRLNWAS--------------FSTGEKRASENGPDLSIFVGDLAPDV 224
Query: 147 NAEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQT 199
+ L + F+ +Y + K+ + KG GFV+F + N A+ ++NG +
Sbjct: 225 SDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQ 284
Query: 200 VRL 202
+R+
Sbjct: 285 MRV 287
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/214 (55%), Positives = 147/214 (68%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
MP++EQ FRLNWA G++R P+ ++FVGDLA DVTD ML ETF Y SVK AKV
Sbjct: 146 MPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKV 205
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
V D TGRSKGYGFVRF D++E+ +AM EMNG YCSSRPMR G A +K
Sbjct: 206 VNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQN 265
Query: 123 XXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNN 182
E++ NTTIFVG +D +V +DL+ F Q+GE+V VKIP GK CGFVQ+ANR
Sbjct: 266 TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRAC 325
Query: 183 AEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGD 216
AE+AL LNGT +G Q++RLSWGR+P+NK + D
Sbjct: 326 AEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S+++GDL + + L F AAKV+ + G S+GYGF+ F + + +
Sbjct: 81 SLWIGDLQPWMDENYLMNVFG-LTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
NG PM P +AE T+FVG L P+V
Sbjct: 140 TYNGA-----PM------PSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHM 188
Query: 151 LRQPF-SQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L + F + Y + K+ KG GFV+FA+ + A+ ++NG + +R
Sbjct: 189 LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/206 (59%), Positives = 149/206 (72%), Gaps = 2/206 (0%)
Query: 7 EQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDA 66
+Q FRLNWA+ S+GDKR D+ PD +IFVGDLA DVTD +L ETF YPSVK AKVV D
Sbjct: 133 DQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDR 191
Query: 67 NTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG-AATPRKXXXXXXXXXXXXXX 125
TGR+KGYGFVRF D++E+ +AM EMNGV CS+RPMRIG AA+ +
Sbjct: 192 VTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAG 251
Query: 126 XXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEE 185
+ + NNTT+FVGGLD +V + L+ FSQYGEIV VKIP GK CGFVQF+ ++ AEE
Sbjct: 252 VTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEE 311
Query: 186 ALQKLNGTTIGKQTVRLSWGRNPANK 211
AL+ LNG +G TVRLSWGR+P+NK
Sbjct: 312 ALRMLNGVQLGGTTVRLSWGRSPSNK 337
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ FA+ V +AKV+ + TG+ +GYGF+ F + +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 91 EMNGVYCSSRP---MRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
N S P R+ A+ +S + TIFVG L +V
Sbjct: 122 TFNNAPIPSFPDQLFRLNWAS--------------LSSGDKRDDSPDYTIFVGDLAADVT 167
Query: 148 AEDLRQPF-SQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L + F + Y + K+ + KG GFV+F++ + A+ ++NG + +
Sbjct: 168 DYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPM 227
Query: 201 RL 202
R+
Sbjct: 228 RI 229
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/208 (57%), Positives = 144/208 (69%), Gaps = 2/208 (0%)
Query: 3 MPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAK 61
MP+TEQ FRLNWA G+KR PD +IFVGDLA +VTD ML +TF N Y SVK AK
Sbjct: 126 MPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAK 185
Query: 62 VVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG-AATPRKXXXXXXXXX 120
VV D TGRSKGYGFVRF D+NE+ +AM EMNG YCS+RPMRIG AA
Sbjct: 186 VVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQ 245
Query: 121 XXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 180
+ + NNTTIFVGGLD NV ++L+ F Q+GE++ VKIP GK CGFVQ+AN+
Sbjct: 246 NTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANK 305
Query: 181 NNAEEALQKLNGTTIGKQTVRLSWGRNP 208
+AE AL LNGT +G Q++RLSWGR+P
Sbjct: 306 ASAEHALSVLNGTQLGGQSIRLSWGRSP 333
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 19/194 (9%)
Query: 17 FSTGDKRSDNVPDL-SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYG 75
+ G + + D+ S+++GDL + + + FA +AKV+ + TG+S+GYG
Sbjct: 46 YGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQS-GEATSAKVIRNKLTGQSEGYG 104
Query: 76 FVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNT 135
F+ F + + + NG PM T R + E +
Sbjct: 105 FIEFVSHSVAERVLQTYNGA-----PMPSTEQTFR-----LNWAQAGAGEKRFQTEGPDH 154
Query: 136 TIFVGGLDPNVNAEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEEALQ 188
TIFVG L P V L F YG + K+ + KG GFV+FA+ N A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 189 KLNGTTIGKQTVRL 202
++NG + +R+
Sbjct: 215 EMNGQYCSTRPMRI 228
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 143/218 (65%), Gaps = 13/218 (5%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
MP TE FRLNWA+F +G K D PD SIFVGDLA DVTD +L ETF Y SV+ AKV
Sbjct: 90 MPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKV 148
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
V D +TGRSKGYGFV+F +++ER++AM EMNG+YCS+RPMRI AATP+K
Sbjct: 149 VTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTK 208
Query: 123 XXXXXX------------EAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGK 170
E++ TTI V LD NV E+L++ FSQ GE++ VKIP K
Sbjct: 209 VTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATK 268
Query: 171 GCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 208
G G+VQF R +AEEA+Q++ G IG+Q VR+SW +NP
Sbjct: 269 GYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 306
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 143/222 (64%), Gaps = 17/222 (7%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
MP TE FRLNWA+F +G K D PD SIFVGDLA DVTD +L ETF Y SV+ AKV
Sbjct: 90 MPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKV 148
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
V D +TGRSKGYGFV+F +++ER++AM EMNG+YCS+RPMRI AATP+K
Sbjct: 149 VTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTK 208
Query: 123 XXXXXX----------------EAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKI 166
E++ TTI V LD NV E+L++ FSQ GE++ VKI
Sbjct: 209 AVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI 268
Query: 167 PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 208
P KG G+VQF R +AEEA+Q++ G IG+Q VR+SW +NP
Sbjct: 269 PATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Query: 7 EQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDA 66
+Q FRLNWA+ S+GDKR D+ PD +IFVGDLA DVTD +L ETF YPSVK AKVV D
Sbjct: 133 DQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDR 191
Query: 67 NTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK-XXXXXXXXXXXXXX 125
TGR+KGYGFVRF D++E+ +AM EMNGV CS+RPMRIG A +K
Sbjct: 192 VTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAG 251
Query: 126 XXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 180
+ + NNTT+FVGGLD +V + L+ FSQYGEIV VKIP GK CGFVQF+ +
Sbjct: 252 VTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ FA+ V +AKV+ + TG+ +GYGF+ F + +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 91 EMNGVYCSSRP---MRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
N S P R+ A+ +S + TIFVG L +V
Sbjct: 122 TFNNAPIPSFPDQLFRLNWAS--------------LSSGDKRDDSPDYTIFVGDLAADVT 167
Query: 148 AEDLRQPF-SQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L + F + Y + K+ + KG GFV+F++ + A+ ++NG + +
Sbjct: 168 DYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPM 227
Query: 201 RL 202
R+
Sbjct: 228 RI 229
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/110 (80%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 3 MPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAK 61
MPNT+QPFRLNWA+FSTG+KR +N PDLSIFVGDL+ DV+D +LHETF+ KYPSVKAAK
Sbjct: 169 MPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAK 228
Query: 62 VVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 111
VV DANTGRSKGYGFVRFGD+NER++AM EMNGV CSSR MRIG ATPRK
Sbjct: 229 VVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFAN-KYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 89
+I+VGDL + + L+ +FA+ + + KV+ + N G S+GYGFV F + + +
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 90 NEMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
E NG + +P R+ A+ E + +IFVG L P+V+
Sbjct: 162 REFNGTTMPNTDQPFRLNWAS------------FSTGEKRLENNGPDLSIFVGDLSPDVS 209
Query: 148 AEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L + FS+ Y + + K+ + KG GFV+F + N +A+ ++NG + +
Sbjct: 210 DNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAM 269
Query: 201 RL 202
R+
Sbjct: 270 RI 271
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 110/221 (49%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
QP ++NWA ++TG +R D +IFVGDL+ +VTD L ++F+ + S A+V++D
Sbjct: 128 QPMKVNWA-YATG-QREDTSSHFNIFVGDLSPEVTDAALFDSFS-AFNSCSDARVMWDQK 184
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT--------------PRKXX 113
TGRS+G+GFV F + + A+NEMNG + SSR +R AT
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVE 244
Query: 114 XXXXXXXXXXXXXXXEAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGE--IVSVKIPV 168
+A NN TT++VG L P V DL + F G I V++
Sbjct: 245 LTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQR 304
Query: 169 GKGCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 208
KG GFV++ + A A+Q N + + +R SWG P
Sbjct: 305 DKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 345
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++ G++ VT+ +L E FA+ P +++ K++ + YGFV + D S A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGP-IESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +PM++ A E S++ IFVG L P V
Sbjct: 119 TLNGRHIFGQPMKVNWA---------------YATGQREDTSSHFNIFVGDLSPEVTDAA 163
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS + ++ +G GFV F N+ +A+ A+ ++NG + + +R +W
Sbjct: 164 LFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNW 223
Query: 205 GRNPA 209
A
Sbjct: 224 ATKGA 228
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 110/218 (50%), Gaps = 20/218 (9%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
QP ++NWA +++G +R D +IFVGDL+ +VTD ML F+ YP+ A+V++D
Sbjct: 119 QPIKVNWA-YASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFS-VYPTCSDARVMWDQK 175
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
TGRS+G+GFV F + + A++E+ G + SR +R AT
Sbjct: 176 TGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVE 235
Query: 128 X-----------EAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGE--IVSVKIPVGKG 171
EA NN TT++VG L P V+ DL + F G I V++ KG
Sbjct: 236 LTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG 295
Query: 172 CGFVQFANRNNAEEALQKLN-GTTIGKQTVRLSWGRNP 208
GFV+++ A A+Q N + + + ++ SWG P
Sbjct: 296 FGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 333
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 26/185 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ VT+ +L E FA P V++ K++ + YGFV + D A+
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGP-VESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +P+++ A E S++ IFVG L P V
Sbjct: 110 SLNGRHLFGQPIKVNWA---------------YASGQREDTSSHFNIFVGDLSPEVTDAM 154
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ +G GFV F N+ +A+ A+ ++ G +G + +R +W
Sbjct: 155 LFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNW 214
Query: 205 GRNPA 209
A
Sbjct: 215 ATKGA 219
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
QP ++NWA ++TG +R D +IFVGDL+ +VTD L+++F+ + S A+V++D
Sbjct: 124 QPIKVNWA-YATG-QREDTSSHFNIFVGDLSPEVTDATLYQSFS-VFSSCSDARVMWDQK 180
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXX-------------- 113
TGRS+G+GFV F + + A+NEMNG + SSR +R AT
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVE 240
Query: 114 XXXXXXXXXXXXXXXEAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGE--IVSVKIPV 168
E NN TT++VG L P V DL + F G I V++
Sbjct: 241 LTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQR 300
Query: 169 GKGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLSWGRNP 208
KG GFV++ A A+Q N + + ++ SWG P
Sbjct: 301 DKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKP 341
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ VT+ +L E F + P V+++K++ + YGFV + D + A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGP-VESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +P+++ A E S++ IFVG L P V
Sbjct: 115 SLNGRHLFGQPIKVNWA---------------YATGQREDTSSHFNIFVGDLSPEVTDAT 159
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L Q FS + ++ +G GFV F N+ +A+ A+ ++NG + + +R +W
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNW 219
Query: 205 G 205
Sbjct: 220 A 220
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
QP ++NWA +++G +R D +IFVGDL+ +VTD ML F+ YP+ A+V++D
Sbjct: 119 QPIKVNWA-YASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFS-VYPTCSDARVMWDQK 175
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
TGRS+G+GFV F + + A++E+ G + SR +R AT
Sbjct: 176 TGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVE 235
Query: 128 X--------------EAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGE--IVSVKIPV 168
EA NN TT++VG L P V+ DL + F G I V++
Sbjct: 236 LTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQR 295
Query: 169 GKGCGFVQFANRNNAEEALQKLN-GTTIGKQTVRLSWGRNP 208
KG GFV+++ A A+Q N + + + ++ SWG P
Sbjct: 296 DKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 336
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 26/185 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ VT+ +L E FA P V++ K++ + YGFV + D A+
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGP-VESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +P+++ A E S++ IFVG L P V
Sbjct: 110 SLNGRHLFGQPIKVNWA---------------YASGQREDTSSHFNIFVGDLSPEVTDAM 154
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ +G GFV F N+ +A+ A+ ++ G +G + +R +W
Sbjct: 155 LFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNW 214
Query: 205 GRNPA 209
A
Sbjct: 215 ATKGA 219
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFA--NKYPSV-KAAKVVF 64
QP ++NWA ++TG +R D +IFVGDL+ +VTD L ++F+ N S + A+V++
Sbjct: 128 QPMKVNWA-YATG-QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMW 185
Query: 65 DANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT--------------PR 110
D TGRS+G+GFV F + + A+NEMNG + SSR +R AT
Sbjct: 186 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 245
Query: 111 KXXXXXXXXXXXXXXXXXEAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGE--IVSVK 165
+A NN TT++VG L P V DL + F G I V+
Sbjct: 246 VVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVR 305
Query: 166 IPVGKGCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 208
+ KG GFV++ + A A+Q N + + +R SWG P
Sbjct: 306 VQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 349
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++ G++ VT+ +L E FA+ P +++ K++ + YGFV + D S A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGP-IESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +PM++ A E S++ IFVG L P V
Sbjct: 119 TLNGRHIFGQPMKVNWA---------------YATGQREDTSSHFNIFVGDLSPEVTDAA 163
Query: 151 LRQPFSQYGEIVSV----------KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L FS + S K +G GFV F N+ +A+ A+ ++NG + + +
Sbjct: 164 LFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Query: 201 RLSWGRNPA 209
R +W A
Sbjct: 224 RCNWATKGA 232
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL +VTD+ L + F + +V +V D T RS GYG+V F + + ++A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFG-QMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
E+N + +P+R+ S IF+ LD +++ +
Sbjct: 96 ELNYIPLYGKPIRV----------------MYSHRDPSVRRSGAGNIFIKNLDESIDHKA 139
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L FS +G IVS K+ V KG GFVQ+AN +A++A++KLNG + + V
Sbjct: 140 LHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 7/188 (3%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++V +LA TD L F +Y + +A V+ D G+SKG+GFV F + ++ ++A+
Sbjct: 217 VYVKNLAESTTDDDLKNAFG-EYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVES 274
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG + +G A + + ++ ++V LDP+++ E L
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 152 RQPFSQYGEIVSVKI---PVG--KGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
++ FS +G + S K+ P G KG GFV FA A EA+ +L+G I + + ++ +
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Query: 207 NPANKPFR 214
++ R
Sbjct: 395 RKEDRRVR 402
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
+P +P R+ ++ +RS +IF+ +L + LH+TF++ + ++ + KV
Sbjct: 100 IPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKV 155
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
D+ +G+SKGYGFV++ ++ +A+ ++NG+ + + + +G R+
Sbjct: 156 AVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN---- 210
Query: 123 XXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQF 177
++ T ++V L + +DL+ F +YG+I S + KG GFV F
Sbjct: 211 --------KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 178 ANRNNAEEALQKLNG 192
N ++A A++ LNG
Sbjct: 263 ENADDAARAVESLNG 277
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 24 SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDN 83
+D +++V +L ++D L E F+ + +V ++KV+ D N G SKG GFV F
Sbjct: 312 ADKFQSSNLYVKNLDPSISDEKLKEIFS-PFGTVTSSKVMRDPN-GTSKGSGFVAFATPE 369
Query: 84 ERSQAMNEMNGVYCSSRPMRIGAA 107
E ++AM++++G S+P+ + A
Sbjct: 370 EATEAMSQLSGKMIESKPLYVAIA 393
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL VTD+ L E F + V + +V D T RS GYG+V + + S+A+N
Sbjct: 46 SLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
E+N + + R +R+ + +S IF+ LD +++ +
Sbjct: 105 ELNFMALNGRAIRVMYSV----------------RDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L + FS +G I+S K+ V KG GFVQ+ A+ A+ KLNG + + V
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 7/199 (3%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
D + V +++V +L+ ++D L++ F V + V+ G+SKG+GFV F
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF--GVTTSCVIMRDGEGKSKGFGFVNFE 272
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+ ++ ++A++ +NG + +G A + +S + ++V
Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK 332
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTI 195
LD +V + LR+ F+ +G I S K+ V +G GFV F+ A A+ ++NG I
Sbjct: 333 NLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Query: 196 GKQTVRLSWGRNPANKPFR 214
+ + ++ + ++ R
Sbjct: 393 VTKPLYVALAQRKEDRKAR 411
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL VTD+ L E F + V + +V D T RS GYG+V + + S+A+N
Sbjct: 46 SLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
E+N + + R +R+ + +S IF+ LD +++ +
Sbjct: 105 ELNFMALNGRAIRVMYSV----------------RDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L + FS +G I+S K+ V KG GFVQ+ A+ A+ KLNG + + V
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 7/199 (3%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
D + V +++V +L+ ++D L++ F V + V+ G+SKG+GFV F
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF--GVTTSCVIMRDGEGKSKGFGFVNFE 272
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+ ++ ++A++ +NG + +G A + +S + ++V
Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK 332
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTI 195
LD +V + LR+ F+ +G I S K+ V +G GFV F+ A A+ ++NG I
Sbjct: 333 NLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Query: 196 GKQTVRLSWGRNPANKPFR 214
+ + ++ + ++ R
Sbjct: 393 VTKPLYVALAQRKEDRKAR 411
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 8/189 (4%)
Query: 24 SDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDD 82
S VP + ++V +L ++TD L +TF KY + +A VV +G S+ +GFV F
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGDISSA-VVMKDQSGNSRSFGFVNFVSP 289
Query: 83 NERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGL 142
+ A+ +MNG+ + +G A + + + +++ L
Sbjct: 290 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 349
Query: 143 DPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTIGK 197
D +VN E L++ FS+YG + S K+ + +G GFV ++N A A++++NG IG+
Sbjct: 350 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGR 409
Query: 198 QTVRLSWGR 206
+ + ++ +
Sbjct: 410 KPLYVALAQ 418
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+ +L + + L+ETF++ + ++ + KV D GRSKGYGFV+F + A+++
Sbjct: 148 VFIKNLDASIDNKALYETFSS-FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDK 205
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG+ + + + +G R+ A + T ++V L + ++L
Sbjct: 206 LNGMLLNDKQVFVGHFVRRQDRARSESG----------AVPSFTNVYVKNLPKEITDDEL 255
Query: 152 RQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
++ F +YG+I S + + GFV F + A A++K+NG ++G+ + + +
Sbjct: 256 KKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 315
Query: 207 NPANK 211
+++
Sbjct: 316 KKSDR 320
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 8/189 (4%)
Query: 24 SDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDD 82
S VP + ++V +L ++TD L +TF KY + +A VV +G S+ +GFV F
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGDISSA-VVMKDQSGNSRSFGFVNFVSP 289
Query: 83 NERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGL 142
+ A+ +MNG+ + +G A + + + +++ L
Sbjct: 290 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 349
Query: 143 DPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTIGK 197
D +VN E L++ FS+YG + S K+ + +G GFV ++N A A++++NG IG+
Sbjct: 350 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGR 409
Query: 198 QTVRLSWGR 206
+ + ++ +
Sbjct: 410 KPLYVALAQ 418
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+ +L + + L+ETF++ + ++ + KV D GRSKGYGFV+F + A+++
Sbjct: 148 VFIKNLDASIDNKALYETFSS-FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDK 205
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG+ + + + +G R+ A + T ++V L + ++L
Sbjct: 206 LNGMLLNDKQVFVGHFVRRQDRARSESG----------AVPSFTNVYVKNLPKEITDDEL 255
Query: 152 RQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
++ F +YG+I S + + GFV F + A A++K+NG ++G+ + + +
Sbjct: 256 KKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 315
Query: 207 NPANK 211
+++
Sbjct: 316 KKSDR 320
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL +VTD+ L++ F + V + +V DA T S GYG+V + + ++ +AM
Sbjct: 47 SLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
++N Y + + +RI S +FV LD +V+ +
Sbjct: 106 KLNYSYLNGKMIRI----------------TYSSRDSSARRSGVGNLFVKNLDKSVDNKT 149
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L + FS G IVS K+ +G GFVQF ++A+ A++KLNG + + +
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 7/188 (3%)
Query: 24 SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDN 83
+D + +++V +L+ TD L TF +Y S+ +A V+ D + G+S+ +GFV F +
Sbjct: 219 ADKMKFTNVYVKNLSEATTDDELKTTFG-QYGSISSAVVMRDGD-GKSRCFGFVNFENPE 276
Query: 84 ERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLD 143
+ ++A+ +NG + +G A + + + ++V LD
Sbjct: 277 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLD 336
Query: 144 PNVNAEDLRQPFSQYGEIVSVKI---PVG--KGCGFVQFANRNNAEEALQKLNGTTIGKQ 198
V E LR+ F+++G I S K+ P G KG GFV F+ + A L ++NG +G +
Sbjct: 337 DTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGK 396
Query: 199 TVRLSWGR 206
+ ++ +
Sbjct: 397 PLYVALAQ 404
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FV +L V + LHE F+ ++ + KV D + G+S+GYGFV+F ++ A+ +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSG-CGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEK 193
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG + + + +G ++ T ++V L ++L
Sbjct: 194 LNGKVLNDKQIFVGPFLRKEERESAADKMKF------------TNVYVKNLSEATTDDEL 241
Query: 152 RQPFSQYGEIVS-VKIPVGKG---C-GFVQFANRNNAEEALQKLNG 192
+ F QYG I S V + G G C GFV F N +A A++ LNG
Sbjct: 242 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Query: 11 RLNWATFSTGDKRSD---NVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+L A F D+R+ N +++V +L VTD LH F+ +Y +V + V+ D
Sbjct: 180 KLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFS-QYGTVSSVVVMRDG- 237
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
GRS+G+GFV F + +AM + G+ S+ + +G A +K
Sbjct: 238 MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKAL-KKDERREMLKQKFSDNFI 296
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNN 182
+ + ++V L ++N LR+ F YG+IVS K+ KG GFV F+N
Sbjct: 297 AKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEE 356
Query: 183 AEEALQKLNGTTI 195
+++A + LNG +
Sbjct: 357 SKQAKRYLNGFLV 369
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+ R+ W+ +R +++V +L +T + L F + S+ + KVV
Sbjct: 90 KAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC-PFGSILSCKVV--EE 146
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
G+SKG+GFV+F + A + ++G + + + +
Sbjct: 147 NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA---------- 196
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNN 182
++T ++V L V + L FSQYG + SV + +G GFV F N N
Sbjct: 197 --GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPEN 254
Query: 183 AEEALQKLNGTTIGKQTV 200
A++A++ L G +G + +
Sbjct: 255 AKKAMESLCGLQLGSKKL 272
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL+ DVT+ L + F+ P V + + ++ TG+S Y ++ F S AM
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVV-SVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N + MRI + ++V LD ++ +
Sbjct: 81 RLNHSDLKGKAMRI-------------MWSQRDLAYRRRTRTGFANLYVKNLDSSITSSC 127
Query: 151 LRQPFSQYGEIVSVKIP----VGKGCGFVQFANRNNAEEALQKLNGTTI 195
L + F +G I+S K+ KG GFVQF +A A L+G+ +
Sbjct: 128 LERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMV 176
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Query: 23 RSDNVPD---LSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 79
R +N P +++V +L ++ + L +TF K+ + +A V+ D +G S+ +GFV F
Sbjct: 219 RDENTPTPRFTNVYVKNLPKEIGEDELRKTFG-KFGVISSAVVMRD-QSGNSRCFGFVNF 276
Query: 80 GDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFV 139
+ A+ +MNG+ + +G A + +S +++
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYL 336
Query: 140 GGLDPNVNAEDLRQPFSQYGEIVSVKI---PVG--KGCGFVQFANRNNAEEALQKLNGTT 194
LD +V+ E L++ FS+YG + S K+ P G +G GFV ++N A AL ++NG
Sbjct: 337 KNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 195 IGKQTVRLSWGRNPANK 211
IG++ + ++ + ++
Sbjct: 397 IGRKPLYIALAQRKEDR 413
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P+ S++ GDL VT+ L + F + +V + +V D N RS GY ++ F + N+ +
Sbjct: 47 PNSSLYAGDLDPKVTEAHLFDLFKH-VANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYR 104
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM +N RP+RI + S IF+ LD +++
Sbjct: 105 AMEALNYTPLFDRPIRIMLSNRDPSTRL----------------SGKGNIFIKNLDASID 148
Query: 148 AEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
+ L + FS +G I+S K+ + KG GFVQF +A+ A+ KLNG + + V
Sbjct: 149 NKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IF+ +L + + L ETF++ + ++ + KV D TGRSKGYGFV+F + A+++
Sbjct: 138 IFIKNLDASIDNKALFETFSS-FGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDK 195
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG+ + + + +G R+ T ++V L + ++L
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRF----------TNVYVKNLPKEIGEDEL 245
Query: 152 RQPFSQYGEIVSVKIPVGKG----C-GFVQFANRNNAEEALQKLNGTTIGKQTV 200
R+ F ++G I S + + C GFV F A A++K+NG ++G +
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL 299
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 8/181 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++V +L TD L F ++ + +A V+ D G+S+ +GFV F A+ +
Sbjct: 121 VYVKNLVETATDADLKRLFG-EFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEK 178
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNN-TTIFVGGLDPNVNAED 150
MNGV + + +G A + + ++ ++V LD +V+
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
L + FS++G I S K+ V KG GFV+F+ A +A+ K+NG +G + + +S
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Query: 206 R 206
+
Sbjct: 299 Q 299
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FV +L + + L + F+ + V + KV DA +G SKGYGFV+F D A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFS-AFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNF 90
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
NG ++ + + R + T ++V L DL
Sbjct: 91 HNGTLIRNQHIHVCPFVSR---------------GQWDKSRVFTNVYVKNLVETATDADL 135
Query: 152 RQPFSQYGEIVS-VKIPVGKG----CGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
++ F ++GEI S V + G+G GFV F A A++K+NG + ++ + + +
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Query: 207 NPANK 211
N+
Sbjct: 196 RKTNR 200
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 30 LSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 89
++++V +L V +T L E F+ ++ ++ + KV+ +N G SKG GFV F E S+AM
Sbjct: 223 MNLYVKNLDDSVDNTKLEELFS-EFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAM 280
Query: 90 NEMNGVYCSSRPMRIGAA 107
+MNG ++P+ + A
Sbjct: 281 LKMNGKMVGNKPIYVSLA 298
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 24/207 (11%)
Query: 10 FRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTG 69
R+ W+ D R + V + +FV +L VT+ +L + F K+ ++ + KV G
Sbjct: 95 IRVMWSV-RAPDARRNGVGN--VFVKNLPESVTNAVLQDMF-KKFGNIVSCKVA-TLEDG 149
Query: 70 RSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXE 129
+S+GYGFV+F ++ A+ +N + + + +G + +
Sbjct: 150 KSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK--------------TDRVK 195
Query: 130 AESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAE 184
E T +++ LD +V+ + LR+ F+++G+IVS+ I + +G FV F N +A
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
Query: 185 EALQKLNGTTIGKQTVRLSWGRNPANK 211
A + +NGT G + + + + A +
Sbjct: 256 RAAETVNGTKFGSKCLYVGRAQKKAER 282
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL VT+ +L++ FA ++ S+ + ++ DA++GRS YG+ F + + A+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFA-EFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNT-TIFVGGLDPNVNAE 149
+ N + + +R+ + +A N +FV L +V
Sbjct: 84 KKNNSLLNGKMIRVMWSV-----------------RAPDARRNGVGNVFVKNLPESVTNA 126
Query: 150 DLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L+ F ++G IVS K+ +G GFVQF + A A+Q LN T + + +
Sbjct: 127 VLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+++ +L DV++ +L E FA ++ + + + D N +GY FV F + + +A
Sbjct: 203 LYMKNLDADVSEDLLREKFA-EFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAET 260
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG S+ + +G A + + + + I+V ++ V E+L
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320
Query: 152 RQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNG 192
R+ FSQ G I S K+ KG GFV F+ A +A++ +G
Sbjct: 321 RKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHG 366
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
DL +FVG+L +V L + F + +V+ +V++D TGRS+G+GFV +E A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 89 MNEMNGVYCSSRPMRIGAATP---------RKXXXXXXXXXXXXXXXXXEAESNNTTIFV 139
+ NG RP+R+ A P R + ++V
Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 140 GGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGT 193
G L V+ L FS+ G++V ++ KG GFV + + + A++ L+G
Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268
Query: 194 TIGKQTVRLS 203
+ + +R+S
Sbjct: 269 DLDGRQIRVS 278
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L+ V D L F+ + V+A +V++D ++GRSKG+GFV + E A+
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEA-RVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 92 MNGVYCSSRPMRIGAATPR 110
++G R +R+ A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D +F GDL +V D +L + FA ++P+ AKV+ D TG++KGYGFV F + + + A
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAFA-RFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 89 MNEMNGVYCSSRPMRI 104
+ EMNG Y +RP+++
Sbjct: 195 LKEMNGKYVGNRPIKL 210
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG ++ + + L E F N Y V A V+ D TGR +G+GFV F D + + + E
Sbjct: 8 LFVGGISWETDEDKLREHFTN-YGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT--IFVGGLDPNVNAE 149
+ + +R + + A R+ ++ N T IFVGGL P + E
Sbjct: 67 KHSI--DTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQT 199
+ RQ F YG + V I +G GFV F + + + L K GKQ
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
>AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr1:2260562-2262795 REVERSE
LENGTH=481
Length = 481
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 136 TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKL-NGTT 194
T++VGGL+ + +D+R F +GEI S++I K C FV + +R AE+A Q+L N
Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 195 IGKQTVRLSWGR 206
I Q ++L+WGR
Sbjct: 289 INGQRLKLTWGR 300
>AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:12652011-12654158 FORWARD
LENGTH=483
Length = 483
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 136 TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKL-NGTT 194
T++VGGL+ V +D+R F +GEI S++I K C FV + R AE+A ++L N
Sbjct: 229 TLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 195 IGKQTVRLSWGRNPANKP 212
+ Q ++L+WGR KP
Sbjct: 289 VNGQRLKLTWGRPQVPKP 306
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG+L DV L F + +V+ ++V+++ +T +S+G+GFV E +A+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLF-EQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
N + R + + A PR I+VG L +V++ L
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR----------IYVGNLPWDVDSGRL 223
Query: 152 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 202
+ FS++G++V ++ +G GFVQ +N N A+ L+G + + +++
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
I+VG+L DV L F+ ++ V A+VV D TGRS+G+GFV+ ++NE + A+
Sbjct: 209 IYVGNLPWDVDSGRLERLFS-EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 92 MNGVYCSSRPMRIGAATPR 110
++G R +++ A R
Sbjct: 268 LDGQNLEGRAIKVNVAEER 286
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 17/177 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG+LA DV L F + +V+ A+V+++ T +S+G+GFV +E A+ +
Sbjct: 152 LFVGNLAYDVNSQALAMLF-EQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
N + R + + A PR ++VG L +V+ L
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR----------VYVGNLPWDVDNGRL 260
Query: 152 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 202
Q FS++G++V ++ +G GFV ++ + EA+ L+G + + +R+
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++VG+L DV + L + F+ ++ V A+VV+D TGRS+G+GFV D +E ++
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFS-EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 88 AMNEMNGVYCSSRPMRIGAATPR 110
A++ ++G R +R+ A R
Sbjct: 301 AISALDGQNLEGRAIRVNVAEER 323
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 32/202 (15%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++FV L+ T + F + V +++ + +TG+ G FV FG NE A+
Sbjct: 309 TLFVAHLSRKTEITHIINFFKD-VGEVVHVRLILN-HTGKHVGCAFVEFGSANEAKMALE 366
Query: 91 EMNGVYCSSRPMRIGAAT------PRKXXXXXXXXXXXXXXXXXEAESNNT--------- 135
NG Y + + + A P+ E N T
Sbjct: 367 TKNGEYLNDCKIFLEVAKMVPYPPPKYCIHHKVWYEDYLRRESLLIEENETEEGLDDTPA 426
Query: 136 ----------TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGK-----GCGFVQFANR 180
T+FV L P + + F E+V V++ V GCGFV+FA+
Sbjct: 427 LVEEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASV 486
Query: 181 NNAEEALQKLNGTTIGKQTVRL 202
N A++ALQK+NG + + + L
Sbjct: 487 NEAQKALQKMNGENLRSREIFL 508
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 129 EAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV---GK--GCGFVQFANRNNA 183
EA T+FV L ++ F + GE+V V++ V GK GCGFV+FA+ N A
Sbjct: 62 EAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEA 121
Query: 184 EEALQKLNGTTIGKQTVRLSWGRNPA 209
EEALQK NG + + L A
Sbjct: 122 EEALQKKNGECLDNNKIFLDVANKKA 147
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++ G+L ++T L + F ++ P V AKV+++ NTGRS+G+GF+ F A+
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 92 MNGVYCSSRPMRIGAATPRK 111
MNGV R +R+ A+ R+
Sbjct: 280 MNGVEVEGRALRLNLASERE 299
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L +T + L + F + +V ++V+D T RS+G+GFV G E +AM
Sbjct: 118 LYVGNLPYTITSSELSQIFG-EAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
N R +++ + +S + ++ G L N+ ++ L
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH-KVYAGNLGWNLTSQGL 235
Query: 152 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
+ F ++ K+ +G GF+ F + N + AL +NG + + +RL+
Sbjct: 236 KDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 136 TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKL 190
+++VGGL ++ E +R+ FS YG +++VKI GK GFV F+NR +A++A++ +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 191 NGTTIGKQTVRL 202
+G +IG + VR+
Sbjct: 68 DGKSIGGRAVRV 79
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 22/181 (12%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IF+G L D T+T+ ++ F KY + + ++ D +TG+ +G+GF+ F D + + + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFG-KYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ + + + + I P+ + IFVGG+ V ++L
Sbjct: 80 THVI--NGKQVEIKRTIPK------------GAGGNQSKDIKTKKIFVGGIPSTVTEDEL 125
Query: 152 RQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL-SW 204
+ F++YG +V ++ +G GFV F + +E L K N + V L W
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSLYKW 185
Query: 205 G 205
G
Sbjct: 186 G 186
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 20 GDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 79
G ++ D +++VG L +++ +L E F P V V D T + YGF+ +
Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNV-YVPKDRVTNLHQNYGFIEY 73
Query: 80 GDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFV 139
+ + A+ +N + +P+R+ A+ K ++ +F+
Sbjct: 74 RSEEDADYAIKVLNMIKLHGKPIRVNKASQDK-----------------KSLDVGANLFI 116
Query: 140 GGLDPNVNAEDLRQPFSQYGEIVS----VKIPV---GKGCGFVQFANRNNAEEALQKLNG 192
G LDP+V+ + L FS +G I S ++ P +G GF+ + + ++ A++ + G
Sbjct: 117 GNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTG 176
Query: 193 TTIGKQTVRLSWG 205
+ + + +S+
Sbjct: 177 QYLSNRQITVSYA 189
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+P R+N A+ DK+S +V ++F+G+L DV + +L++TF+ K++ D +
Sbjct: 94 KPIRVNKAS---QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPD 149
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 107
TG S+G+GF+ + A+ M G Y S+R + + A
Sbjct: 150 TGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + +L E F+N + V V+ + TGR +G+GFV F D + + +
Sbjct: 8 LFIGGISWDTDENLLREYFSN-FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT--IFVGGLDPNVNAE 149
+ + +R + + A R+ ++ +N T IFVGGL P + ++
Sbjct: 67 KH--HIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSD 124
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQT 199
+ R F YG + I + +G GFV F + ++ + L K GKQ
Sbjct: 125 EFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 50 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRI--GAA 107
F N V + ++V + + G+ GYGFV F ++A+ E NG Y + + + G
Sbjct: 177 FFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHE 235
Query: 108 TPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP 167
+P E + T+FV L ++ D+ F GE+V V++
Sbjct: 236 SP----------------GFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLI 279
Query: 168 V---GK--GCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKP 212
V GK G GFV+FA+ N AE+AL K NG + + L + ++P
Sbjct: 280 VNSQGKHAGWGFVEFASANEAEKALVK-NGEYLHNYKISLDGAKTAPHRP 328
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 50 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 109
+ +K+ ++ V+ D +TGRS+G+G+V F + A+ + + +R + + ATP
Sbjct: 22 YMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNRILEVKVATP 79
Query: 110 RKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG 169
++ + T IFV + +V+ D R F +YGEI + +P
Sbjct: 80 KE--------------EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKD 125
Query: 170 ------KGCGFVQFANRNNAEEALQ---KLNGTTI 195
+G GF+ F++ ++ E+ ++ L GTT+
Sbjct: 126 YNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTV 160
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 50 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 109
+ +K+ ++ V+ D +TGRS+G+G+V F + A+ + + +R + + ATP
Sbjct: 22 YMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNRILEVKVATP 79
Query: 110 RKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG 169
++ + T IFV + +V+ D R F +YGEI + +P
Sbjct: 80 KE--------------EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKD 125
Query: 170 ------KGCGFVQFANRNNAEEALQ---KLNGTTI 195
+G GF+ F++ ++ E+ ++ L GTT+
Sbjct: 126 YNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTV 160
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 130 AESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNA 183
A + IFVGGL P V DL + FS++G+I+ +I + +G GF+ FA+R
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61
Query: 184 EEALQKLNGTTIGKQTV 200
+E++++++G G + +
Sbjct: 62 DESIREMHGRDFGDRVI 78
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IFVG L+ +VTD L F +++ + +++ + +TGRS+G+GF+ F D +++ E
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G R + + A P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 92 MNGVYCSSRPMRIGAATPR 110
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 17 FSTGD-----KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRS 71
F+ GD +R+ PDL +FVG+L+ +V L + F + +V+ +V++D TGRS
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRS 139
Query: 72 KGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 109
+G+GFV E A + NG RP+R+ A P
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 92 MNGVYCSSRPMRIGAATPR 110
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 17 FSTGD-----KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRS 71
F+ GD +R+ PDL +FVG+L+ +V L + F + +V+ +V++D TGRS
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRS 139
Query: 72 KGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 109
+G+GFV E A + NG RP+R+ A P
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 92 MNGVYCSSRPMRIGAATPR 110
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 17 FSTGD-----KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRS 71
F+ GD +R+ PDL +FVG+L+ +V L + F + +V+ +V++D TGRS
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRS 139
Query: 72 KGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 109
+G+GFV E A + NG RP+R+ A P
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 280 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 92 MNGVYCSSRPMRIGAATPR 110
+NG R +R+ A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDN--ERSQAM 89
+F+G ++ + ++ L + F + + V A ++ D TGR++G+GFV F D N ER +
Sbjct: 8 LFIGGISWETSEDRLRDYF-HSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 90 NEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAE 149
+ + + A PR SN+ IFVGGL +V
Sbjct: 67 KHI----IDGKIVEAKKAVPRD--DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ ++ F+Q+G I V + +G GF+ + + ++ LQK LNG +
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDN--ERSQAM 89
+F+G ++ + ++ L + F + + V A ++ D TGR++G+GFV F D N ER +
Sbjct: 8 LFIGGISWETSEDRLRDYF-HSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 90 NEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAE 149
+ + + A PR SN+ IFVGGL +V
Sbjct: 67 KHI----IDGKIVEAKKAVPRD--DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ ++ F+Q+G I V + +G GF+ + + ++ LQK LNG +
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV 176
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F+N Y V A ++ D TGR++G+GF+ F D + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT--IFVGGLDPNVNAE 149
M+ R + A PR T IFVGGL ++ E
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ + F Q+G I V + +G GF+ F + + + L K LNG +
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F+N Y V A ++ D TGR++G+GF+ F D + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT--IFVGGLDPNVNAE 149
M+ R + A PR T IFVGGL ++ E
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ + F Q+G I V + +G GF+ F + + + L K LNG +
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F+N Y V A ++ D TGR++G+GF+ F D + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT--IFVGGLDPNVNAE 149
M+ R + A PR T IFVGGL ++ E
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ + F Q+G I V + +G GF+ F + + + L K LNG +
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F+N Y V A ++ D TGR++G+GF+ F D + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT--IFVGGLDPNVNAE 149
M+ R + A PR T IFVGGL ++ E
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 150 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ + F Q+G I V + +G GF+ F + + + L K LNG +
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 21/175 (12%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG +A + ++ L + F+ +Y +V A V + TG+ +G+GFVRF +D + +A+ +
Sbjct: 8 LFVGGIAKETSEEALKQYFS-RYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXX-------XXXXXXXXXXXXEAESNNTT-----IFV 139
+ + +P+ + A + E SN T IFV
Sbjct: 67 TH--FILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 140 GGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQ 188
GGL N E+ + F ++G V + +G GFV + + ++ E +Q
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 21 DKRSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 79
+++ ++ DL +F+G ++ D + L E F KY + A ++ D TGR++G+GF+ F
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 80 GDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESN-----N 134
D + + + M+ R + A PR N
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART 121
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQ 188
IFVGGL ++ + + F Q+G I V + +G GF+ F + + + L
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 189 K----LNGTTI 195
K LNG +
Sbjct: 182 KTFHELNGKMV 192
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 21 DKRSDNVP--------DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSK 72
DK+ D V ++F +A T+ ++E F+ + V+ +++ D + RS+
Sbjct: 214 DKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFS-RAGKVRDVRIIMDRISRRSR 272
Query: 73 GYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAES 132
G G+V F D A+ ++G +P+ + + K
Sbjct: 273 GIGYVEFYDTMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG 331
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEAL 187
++VG L N++ +DLR+ F +G + V++P + KG GFVQFA +A AL
Sbjct: 332 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 391
Query: 188 QKLNG-TTIGKQTVRLS 203
LNG I + +++S
Sbjct: 392 N-LNGQLEIAGRAIKVS 407
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 21 DKRSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 79
+++ ++ DL +F+G ++ D + L E F KY + A ++ D TGR++G+GF+ F
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVF 60
Query: 80 GDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESN-----N 134
D + + + M+ R + A PR N
Sbjct: 61 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART 118
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQ 188
IFVGGL ++ + + F Q+G I V + +G GF+ F + + + L
Sbjct: 119 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 178
Query: 189 K----LNGTTI 195
K LNG +
Sbjct: 179 KTFHELNGKMV 189
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG L+ D+ L + F + + V A V+ D TGRS+G+GFV F ++ + A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG L+ D+ L + F + + V A V+ D TGRS+G+GFV F ++ + A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 17 FSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGF 76
F +GD S IF+G L D T+T+ ++ F KY + + ++ D +TG+ +G+GF
Sbjct: 10 FQSGDGASPG----KIFIGGLHKDTTNTVFNKHFG-KYGEITDSVIMRDRHTGQPRGFGF 64
Query: 77 VRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT 136
+ F D + + + + + + + + I P+ +
Sbjct: 65 ITFADPSVVDKVIEDTH--VINGKQVEIKRTIPK------------GAGGNQSKDIKTKK 110
Query: 137 IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKL 190
IFVGG+ V ++L+ F++YG +V ++ +G GFV F + +E L K
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 191 NGTTIGKQTVRL 202
N + V +
Sbjct: 171 NMIDMADTQVEI 182
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG+L+ VT L F + V A+VVFD +TGRS+GYGFV + E A+
Sbjct: 179 LFVGNLSWTVTSESLAGAF-RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 92 MNGVYCSSRPMRIGAATPRK 111
++G R +R+ A +K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++ G+L +V L + + + + + +V+++ +TG+S+G+ FV + + + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQD-FANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
++G R +++ A K E E +FVG L V +E L
Sbjct: 146 LDGTEYLGRALKVNFADKPK---------PNKEPLYPETEHK---LFVGNLSWTVTSESL 193
Query: 152 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
F + G++V ++ +G GFV ++++ E AL+ L+G + + +R++
Sbjct: 194 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Query: 206 R 206
+
Sbjct: 254 Q 254
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++F +A T+ ++E F+ + V+ +++ D + RS+G G+V F D A+
Sbjct: 183 TVFAYQIALRATERDVYEFFS-RAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
++G +P+ + + K ++VG L N++ +D
Sbjct: 242 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDD 300
Query: 151 LRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNG-TTIGKQTVRLS 203
LR+ F +G + V++P + KG GFVQFA +A AL LNG I + +++S
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 358
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++F + T+ ++E F+ K V+ +++ D N+ RSKG G++ F D A+
Sbjct: 169 TVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTI----------FVG 140
++G +P+ + + K A+SN+TT+ +VG
Sbjct: 228 -LSGQLFLGQPVMVKPSEAEKNL----------------AQSNSTTVGGTGPADRKLYVG 270
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT- 193
L N++ LRQ F +G + V++P+ KG GF+QF +++ A LNG
Sbjct: 271 NLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
Query: 194 TIGKQTVRLS 203
I +T+++S
Sbjct: 331 EIAGRTIKVS 340
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L E F++ + V A ++ D TGR++G+GFV F D + E
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ + R + A PR IFVGGL +V D
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 190
+ F Q+G V + +G GF+ + ++EEA++K+
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVEKV 165
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L E F++ + V A ++ D TGR++G+GFV F D + E
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ + R + A PR IFVGGL +V D
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 190
+ F Q+G V + +G GF+ + ++EEA++K+
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVEKV 165
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 39/209 (18%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
M + +PFR + + F + + ++VG L + T++ L E F +Y + V
Sbjct: 1 MALSMKPFRADDSGFQSNN----------LWVGSLTPETTESDLTELFG-RYGDIDRITV 49
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
S+G+ F+ + E A + G + ++I A P K
Sbjct: 50 Y------SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPC--------- 94
Query: 123 XXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNN 182
+++VGG+ PNV+ +DL + FS++G+I + + F+ + ++
Sbjct: 95 ------------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDD 142
Query: 183 AEEALQKLNGTTIGKQTVRLSWGRNPANK 211
A +A + +NG +G +R+ + R+ A K
Sbjct: 143 ALQA-KSMNGKPMGGSFLRVDFLRSQAPK 170
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 134 NTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEAL 187
+ IFVGGL +V L F +YG+I +I VG +G GF+ F +R A++A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 188 QKLNGTTIGKQTV 200
+ ++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
D+ +D + IFVG L+ DVT+ L TF ++Y + +++ +TGR +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPR 110
D A+ M+G ++ + + A P+
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 134 NTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEAL 187
+ IFVGGL +V L F +YG+I +I VG +G GF+ F +R A++A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 188 QKLNGTTIGKQTV 200
+ ++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
D+ +D + IFVG L+ DVT+ L TF ++Y + +++ +TGR +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPR 110
D A+ M+G ++ + + A P+
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 39/204 (19%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+PFR + + F + + ++VG L + T++ L E F +Y + V
Sbjct: 6 KPFRADDSGFQSNN----------LWVGSLTPETTESDLTELFG-RYGDIDRITVY---- 50
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPCK------------- 95
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 187
+++VGG+ PNV+ +DL + FS++G+I + + F+ + ++A +A
Sbjct: 96 --------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 188 QKLNGTTIGKQTVRLSWGRNPANK 211
+ +NG +G +R+ + R+ A K
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPK 170
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 39/204 (19%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+PFR + + F + + ++VG L + T++ L E F +Y + V
Sbjct: 6 KPFRADDSGFQSNN----------LWVGSLTPETTESDLTELFG-RYGDIDRITVY---- 50
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPCK------------- 95
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 187
+++VGG+ PNV+ +DL + FS++G+I + + F+ + ++A +A
Sbjct: 96 --------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 188 QKLNGTTIGKQTVRLSWGRNPANK 211
+ +NG +G +R+ + R+ A K
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPK 170
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 39/204 (19%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+PFR + + F + + ++VG L + T++ L E F +Y + V
Sbjct: 6 KPFRADDSGFQSNN----------LWVGSLTPETTESDLTELFG-RYGDIDRITVY---- 50
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 127
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPCK------------- 95
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 187
+++VGG+ PNV+ +DL + FS++G+I + + F+ + ++A +A
Sbjct: 96 --------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 188 QKLNGTTIGKQTVRLSWGRNPANK 211
+ +NG +G +R+ + R+ A K
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPK 170
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 57 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXX 116
V+ +++ D + RS+G G+V F D A+ ++G +P+ + + K
Sbjct: 246 VRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQS 304
Query: 117 XXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKG 171
++VG L N++ +DLR+ F +G + V++P + KG
Sbjct: 305 TTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKG 364
Query: 172 CGFVQFANRNNAEEALQKLNG-TTIGKQTVRLS 203
GFVQFA +A AL LNG I + +++S
Sbjct: 365 FGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 396
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 32 IFVGDLAGDVTDTMLHETFAN---KYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
+FVG ++ + T ETFAN K+ V + ++ D TG +G+GFV F D +
Sbjct: 68 LFVGGVSWETT----AETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV 123
Query: 89 MNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
+ E + + R + + PR +A S IFVGGL P +
Sbjct: 124 LEEDHVI--DDRKVDLKRTLPR-----------GDKDTDIKAVSKTRKIFVGGLPPLLEE 170
Query: 149 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 202
++L+ F YG+I+ +I +G GFV F ++ + +G + V +
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEI 230
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G L+ V + L + F++ + V ++ +D +GRS+G+GFV F ++ + A +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G RP+RI A R
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=423
Length = 423
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 67 NTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT------PRKXXXXXXXXX 120
+TG+ G GFV F E A+ + G Y + + AA P+
Sbjct: 218 HTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQERD 277
Query: 121 XXXXXXXXEA-----ESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGK----- 170
E E+ T+FV L P + + + F + E+V V++ V +
Sbjct: 278 EAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDF-EVVRVRLIVDQSGKHM 336
Query: 171 GCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
GCG+ +FA+ N AE+AL++ NG ++ + L
Sbjct: 337 GCGYFEFASANEAEKALEQRNGKSLRYHKIFLELAE 372
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 33 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 92
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 93 NGVYCSSRPMRIGAATPR 110
NG R + + A R
Sbjct: 68 NGKELDGRVITVNEAQSR 85
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P+ F+G LA +D L + F KY + AKVV D +GRS+G+GF+ F + +
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 88 AMNEMNGVYCSSRPMRIGAATP 109
A+ MNG+ R + + A P
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQP 85
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 92
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 93 NGVYCSSRPMRIGAA 107
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 33 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 92
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 93 NGVYCSSRPMRIGAA 107
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKI---------PVGKGCGFVQFANRNNAEE 185
T ++VG L P V+ L + F ++G I SVKI + CGFV F NR + +
Sbjct: 179 TNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQA 238
Query: 186 ALQKLNGTTIGKQTVRLSWGR 206
A ++ G + + +++ WG+
Sbjct: 239 AKDEMQGIIVYEYELKIGWGK 259
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IFVG ++ + L E F+ KY V AK++ D TGRS+G+ FV F E S AM +
Sbjct: 36 IFVGGISYSTDEFGLREAFS-KYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 92 MNGVYCSSRPMRIGAAT 108
++G R +R+ AT
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 186
+++ +F+GG+ +++ + LR+ F++YGE+V ++ + +G GFV F + A A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 187 LQKLNGTTIGKQTVRLSW 204
+Q L+G + + V++++
Sbjct: 98 IQALDGRDLHGRVVKVNY 115
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G +A + + L E F KY V +V+ D TGRS+G+GFV F S A+
Sbjct: 42 LFIGGMAYSMDEDSLREAF-TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 92 MNGVYCSSRPMRIGAATPR 110
++G R +++ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 137 IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIG 196
+FVG + DL + F +YG + V + G FV F + +AE+A++KL+ G
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM--KSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 197 KQTVRLS--WGRNPANKPFRGDFGSPWN 222
+ RLS W + +P RGD +P N
Sbjct: 62 YEKRRLSVEWAKGERGRP-RGDAKAPSN 88
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 92
FVG LA D L FA +Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 93 NGVYCSSRPMRIGAA 107
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 92
FVG LA D L FA +Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 93 NGVYCSSRPMRIGAA 107
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 23/177 (12%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IFVG LA + T + F KY + + ++ D TG+ +G+GFV + D + + + +
Sbjct: 44 IFVGGLARETTSAEFLKHFG-KYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ + + + I PR + IFVGG+ +V+ ++
Sbjct: 103 NHIII--GKQVEIKRTIPRGSMSSN--------------DFKTKKIFVGGIPSSVDDDEF 146
Query: 152 RQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 202
++ F Q+GE+ +I +G GFV + + + + L K N + V +
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203