Miyakogusa Predicted Gene
- Lj1g3v1648780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1648780.1 Non Chatacterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,28.42,0.000000000002,seg,NULL; no description,Nucleotide-binding,
alpha-beta plait; RRM_1,RNA recognition motif domain; R,CUFF.27617.1
(295 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 303 1e-82
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 301 3e-82
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 285 3e-77
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 280 8e-76
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 278 2e-75
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 245 3e-65
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 245 3e-65
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 244 6e-65
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 244 7e-65
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 243 2e-64
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 234 7e-62
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 115 4e-26
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 114 1e-25
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 111 5e-25
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 110 2e-24
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 110 2e-24
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 82 4e-16
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 82 6e-16
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 80 2e-15
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 79 4e-15
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 78 7e-15
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 77 1e-14
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 77 1e-14
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 2e-14
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 75 6e-14
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 75 6e-14
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 75 8e-14
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 74 1e-13
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 74 1e-13
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 4e-13
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 72 5e-13
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 69 4e-12
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 4e-11
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 59 6e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 6e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 58 6e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 58 6e-09
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 58 8e-09
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 58 8e-09
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 58 8e-09
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 58 9e-09
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 57 1e-08
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 57 1e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 1e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 1e-08
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 57 1e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 8e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 54 1e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 53 2e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 53 3e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 4e-07
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 4e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 52 6e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 52 6e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 52 6e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 52 6e-07
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 50 1e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 50 1e-06
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 2e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 3e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 4e-06
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 48 7e-06
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/228 (66%), Positives = 178/228 (78%), Gaps = 11/228 (4%)
Query: 42 AMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVPS--HSHQGSSAADNKTIWVGDLHH 99
+++PH M+ YAPPP + PYHQY +H S + HQ + +NKTIWVGDLHH
Sbjct: 57 TVIIPHQMM----YAPPP--FPPYHQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHH 110
Query: 100 WMDENYLHRCFASIGE--INSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMP 157
WMDE YL+ FAS E I S+KVIRNK+ GLSEGYGFVEF SH A+KVL+ + G MP
Sbjct: 111 WMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMP 170
Query: 158 NTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVV 216
NT+QPFRLNWA+FSTG+KR +N PDLSIFVGDL+ DV+D +LHETF+ KYPSVKAAKVV
Sbjct: 171 NTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVV 230
Query: 217 FDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
DANTGRSKGYGFVRFGD+NER++AM EMNGV CSSR MRIG ATPRK
Sbjct: 231 LDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/228 (66%), Positives = 178/228 (78%), Gaps = 11/228 (4%)
Query: 42 AMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVPS--HSHQGSSAADNKTIWVGDLHH 99
+++PH M+ YAPPP + PYHQY +H S + HQ + +NKTIWVGDLHH
Sbjct: 57 TVIIPHQMM----YAPPP--FPPYHQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHH 110
Query: 100 WMDENYLHRCFASIGE--INSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMP 157
WMDE YL+ FAS E I S+KVIRNK+ GLSEGYGFVEF SH A+KVL+ + G MP
Sbjct: 111 WMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMP 170
Query: 158 NTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVV 216
NT+QPFRLNWA+FSTG+KR +N PDLSIFVGDL+ DV+D +LHETF+ KYPSVKAAKVV
Sbjct: 171 NTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVV 230
Query: 217 FDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
DANTGRSKGYGFVRFGD+NER++AM EMNGV CSSR MRIG ATPRK
Sbjct: 231 LDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 91 TIWVGDLHHWMDENYLHRCFA-SIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
+I+VGDL + +N LH F+ + + KV+ + +TG S+GYGFV F + K +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 150 TYAGMLMPNTEQPFRLNWAT---------------FSTGDKRSDNVPDLSIFVGDLAGDV 194
G+ + + R+ AT T + ++ + +IFVG L V
Sbjct: 258 EMNGVKC--SSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 195 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 254
TD L + F N++ + + K+ KG GFV+F + +A+ ++NG +
Sbjct: 316 TDEDLKQPF-NEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 255 MRI 257
+R+
Sbjct: 369 VRL 371
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/224 (61%), Positives = 170/224 (75%), Gaps = 22/224 (9%)
Query: 59 PQAYMPYHQ--YQQQVPMHVPSHSHQGS---------------SAADNKTIWVGDLHHWM 101
P Y+PY+Q YQQ H P GS S D KT+WVGDL HWM
Sbjct: 64 PHQYVPYNQGPYQQ----HHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWM 119
Query: 102 DENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQ 161
DE YLH CF+ GE++S+KVIRNK T SEGYGFVEF S + AE+VLQ Y+G +MPN++Q
Sbjct: 120 DETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQ 179
Query: 162 PFRLNWATFSTGDKRS-DNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 220
PFR+NWA+FSTG+KR+ +N PDLS+FVGDL+ DVTD +LHETF+++YPSVK+AKVV D+N
Sbjct: 180 PFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSN 239
Query: 221 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
TGRSKGYGFVRFGD+NERS+A+ EMNG YCS+R MR+G ATP++
Sbjct: 240 TGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 280 bits (716), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 129/183 (70%), Positives = 152/183 (83%), Gaps = 1/183 (0%)
Query: 83 GSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHS 142
GS D KT+WVGDL HWMDE YLH CF+ E++S+KVIRNK T SEGYGFVEF S S
Sbjct: 112 GSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRS 171
Query: 143 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHE 201
AE+ LQ+++G+ MPN EQPFRLNWA+FSTG+KR S+N PDLSIFVGDLA DV+D +L E
Sbjct: 172 AAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLE 231
Query: 202 TFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
TFA +YPSVK AKVV D+NTGRSKGYGFVRFGD+NERS+AM EMNG +CSSR MR+G AT
Sbjct: 232 TFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIAT 291
Query: 262 PRK 264
P++
Sbjct: 292 PKR 294
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 28/188 (14%)
Query: 91 TIWVGDLHHWMDENYLHRCFAS-IGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL- 148
+I+VGDL + + L FA + KV+ + +TG S+GYGFV F + + +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 149 ----------QTYAGMLMP---------NTEQPFRLNWATFSTGDKRSDNVPDLSIFVGD 189
Q G+ P N Q L G + +IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVY 249
L DVT+ L + F++ + V + K+ KG GFV+F + +A+ +NG
Sbjct: 334 LDADVTEEDLMQPFSD-FGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNGTV 386
Query: 250 CSSRPMRI 257
+R+
Sbjct: 387 IGKNTVRL 394
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/205 (68%), Positives = 159/205 (77%), Gaps = 5/205 (2%)
Query: 65 YHQYQQQVPMHVPS--HSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGE--INSIK 120
YHQY H S + HQ + +NKTIWVGDL +WMDE YL+ F S E I S+K
Sbjct: 76 YHQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLK 135
Query: 121 VIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKR-SDN 179
VIRNK G SEGYGFVEF SH A+KVLQ + G MPNT+QPFRLNWA+FSTG+KR +N
Sbjct: 136 VIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENN 195
Query: 180 VPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 239
PDLSIFVGDLA DV+D +LHETF+ KYPSVKAAKVV DANTGRSKGYGFVRFGD+NER+
Sbjct: 196 GPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERT 255
Query: 240 QAMNEMNGVYCSSRPMRIGAATPRK 264
+AM EMNGV CSSR MRIG ATPRK
Sbjct: 256 KAMTEMNGVKCSSRAMRIGPATPRK 280
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 91 TIWVGDLHHWMDENYLHRCFAS-IGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
+I+VGDL + + LH F+ + + KV+ + +TG S+GYGFV F + K +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 150 TYAGM-----------LMPNTEQPFRLNWATFSTG--DKRSDNVPDLSIFVGDLAGDVTD 196
G+ P ++ +G + + + +IFVG L VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 197 TMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMR 256
L + F+ ++ + + K+ KG GFV+F + +A+ ++NG + +R
Sbjct: 320 EDLKQPFS-EFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 372
Query: 257 I 257
+
Sbjct: 373 L 373
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 140/184 (76%), Gaps = 1/184 (0%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
H + + +T+W+GDL +W+DENYL CF+ GE+ S+KVIRNK TG EGYGF+EF S
Sbjct: 15 HHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFIS 74
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
H+ AE+ LQTY G MP TE FRLNWA+F +G K D PD SIFVGDLA DVTD +L
Sbjct: 75 HAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQ 133
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
ETF Y SV+ AKVV D +TGRSKGYGFV+F +++ER++AM EMNG+YCS+RPMRI AA
Sbjct: 134 ETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
Query: 261 TPRK 264
TP+K
Sbjct: 194 TPKK 197
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 140/184 (76%), Gaps = 1/184 (0%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
H + + +T+W+GDL +W+DENYL CF+ GE+ S+KVIRNK TG EGYGF+EF S
Sbjct: 15 HHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFIS 74
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
H+ AE+ LQTY G MP TE FRLNWA+F +G K D PD SIFVGDLA DVTD +L
Sbjct: 75 HAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQ 133
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
ETF Y SV+ AKVV D +TGRSKGYGFV+F +++ER++AM EMNG+YCS+RPMRI AA
Sbjct: 134 ETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
Query: 261 TPRK 264
TP+K
Sbjct: 194 TPKK 197
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 244 bits (622), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 158/237 (66%), Gaps = 26/237 (10%)
Query: 44 VMPHHMLPPLHYA---------------PPPQAYMPYHQYQQQVPMHVPSHSHQGSSAAD 88
++PHH PP PPPQ + P Q P V Q ++A +
Sbjct: 10 ILPHHAPPPSAQQQYGYQQPYGIAGAAPPPPQMWNP----QAAAPPSV-----QPTTADE 60
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
+T+W+GDL +WMDEN+L+ CFA GE+ S KVIRNK TG EGYGF+EF SH+ AE+VL
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 149 QTYAGMLMPN-TEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKY 207
QT+ +P+ +Q FRLNWA+ S+GDKR D+ PD +IFVGDLA DVTD +L ETF Y
Sbjct: 121 QTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASY 179
Query: 208 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
PSVK AKVV D TGR+KGYGFVRF D++E+ +AM EMNGV CS+RPMRIG A +K
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 24/159 (15%)
Query: 91 TIWVGDLHHWMDENYLHRCF-ASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
TI+VGDL + + L F AS + KV+ ++ TG ++GYGFV F S + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 150 TYAGMLMPNTEQPFRLNWATFS---TGDKRS----------DNVPD-LSIFVGDLAGDVT 195
G+ P + +P R+ A TG + S DN P+ ++FVG L VT
Sbjct: 216 EMNGV--PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGD 234
D L F+ +Y + K+ K GFV+F +
Sbjct: 274 DDHLKNVFS-QYGEIVHVKIP------AGKRCGFVQFSE 305
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 158/237 (66%), Gaps = 26/237 (10%)
Query: 44 VMPHHMLPPLHYA---------------PPPQAYMPYHQYQQQVPMHVPSHSHQGSSAAD 88
++PHH PP PPPQ + P Q P V Q ++A +
Sbjct: 10 ILPHHAPPPSAQQQYGYQQPYGIAGAAPPPPQMWNP----QAAAPPSV-----QPTTADE 60
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
+T+W+GDL +WMDEN+L+ CFA GE+ S KVIRNK TG EGYGF+EF SH+ AE+VL
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 149 QTYAGMLMPN-TEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKY 207
QT+ +P+ +Q FRLNWA+ S+GDKR D+ PD +IFVGDLA DVTD +L ETF Y
Sbjct: 121 QTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASY 179
Query: 208 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
PSVK AKVV D TGR+KGYGFVRF D++E+ +AM EMNGV CS+RPMRIG A +K
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 91 TIWVGDLHHWMDENYLHRCF-ASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
TI+VGDL + + L F AS + KV+ ++ TG ++GYGFV F S + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 150 TYAGMLMPNTEQPFRLNWATFS---TGDKRS----------DNVPD-LSIFVGDLAGDVT 195
G+ P + +P R+ A TG + S DN P+ ++FVG L VT
Sbjct: 216 EMNGV--PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPM 255
D L F+ +Y + K+ K GFV+F + + +A+ +NGV +
Sbjct: 274 DDHLKNVFS-QYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 256 RI 257
R+
Sbjct: 327 RL 328
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Query: 85 SAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA 144
SA+D K++W+GDL WMDENY+ FA GE S KVIRNK TG SEGYGF+EF SHS A
Sbjct: 55 SASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVA 114
Query: 145 EKVLQTYAGMLMPNTEQPFRLNWATFSTGDKR-SDNVPDLSIFVGDLAGDVTDTMLHETF 203
E+VLQTY G MP+TEQ FRLNWA G+KR PD +IFVGDLA +VTD ML +TF
Sbjct: 115 ERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTF 174
Query: 204 ANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
N Y SVK AKVV D TGRSKGYGFVRF D+NE+ +AM EMNG YCS+RPMRIG A
Sbjct: 175 KNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 91 TIWVGDLHHWMDENYLHRCFASI-GEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
TI+VGDL + + L F ++ G + KV+ +++TG S+GYGFV F + + +
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 150 TYAGMLMPNTEQPFRLNWATF-------------STGDKRSDNVPD-LSIFVGDLAGDVT 195
G + +P R+ A + G DN P+ +IFVG L +VT
Sbjct: 215 EMNGQYC--STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPM 255
D L F ++ + K+ K GFV++ + A++ +NG + +
Sbjct: 273 DDELKSIFG-QFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGGQSI 325
Query: 256 RI 257
R+
Sbjct: 326 RL 327
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 112/206 (54%), Positives = 137/206 (66%)
Query: 85 SAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA 144
SA + +++W+GDL WMDENYL F GE + KVIRNK G SEGYGF+EF +H+TA
Sbjct: 75 SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATA 134
Query: 145 EKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFA 204
E+ LQTY G MP++EQ FRLNWA G++R P+ ++FVGDLA DVTD ML ETF
Sbjct: 135 ERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFK 194
Query: 205 NKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
Y SVK AKVV D TGRSKGYGFVRF D++E+ +AM EMNG YCSSRPMR G A +K
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Query: 265 XXXXXXXXXXXXXXXXXEAESNNTTV 290
E++ NTT+
Sbjct: 255 PLTMQPASYQNTQGNSGESDPTNTTI 280
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 91 TIWVGDLHHWMDENYLHRCFASI-GEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
T++VGDL + ++ L F ++ + KV+ +++TG S+GYGFV F S + +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 150 TYAGMLMPN---------TEQPFRLNWATF--STGDKRSDNVPDLSIFVGDLAGDVTDTM 198
G + ++P + A++ + G+ + + +IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRI 257
L F ++ + K+ K GFV++ + QA++ +NG + +R+
Sbjct: 294 LKSVFG-QFGELVHVKIP------AGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 9/172 (5%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
++++ G++H + E L FAS G I S K+IR + YGFV ++ A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 150 TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPS 209
T G + QP ++NWA ++TG +R D +IFVGDL+ +VTD L ++F+ + S
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATG-QREDTSSHFNIFVGDLSPEVTDAALFDSFS-AFNS 173
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
A+V++D TGRS+G+GFV F + + A+NEMNG + SSR +R AT
Sbjct: 174 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 38/197 (19%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
I+VGDL + + L F++ + +V+ ++ TG S G+GFV F + A+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 152 AGMLMPNTEQPFRLNWAT------------------------------FSTGDKRSDNVP 181
G + + + R NWAT S D +N
Sbjct: 210 NGKWV--SSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQ 267
Query: 182 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 241
+++VG+L+ +VT LH F A V+ + R KG+GFVR+ +E + A
Sbjct: 268 FTTVYVGNLSPEVTQLDLHRLF-----YTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALA 322
Query: 242 MNEMNGV-YCSSRPMRI 257
+ N + SR +R
Sbjct: 323 IQMGNAQPFLFSRQIRC 339
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
++++VG++H + E L F S G + S K+IR + YGFV ++ +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 150 TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPS 209
+ G + QP ++NWA ++TG +R D +IFVGDL+ +VTD L+++F+ + S
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATG-QREDTSSHFNIFVGDLSPEVTDATLYQSFS-VFSS 169
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
A+V++D TGRS+G+GFV F + + A+NEMNG + SSR +R AT
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT 221
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 101/175 (57%), Gaps = 11/175 (6%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
++++ G++H + E L FAS G I S K+IR + YGFV ++ A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 150 TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFA--NKY 207
T G + QP ++NWA ++TG +R D +IFVGDL+ +VTD L ++F+ N
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATG-QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 208 PSV-KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
S + A+V++D TGRS+G+GFV F + + A+NEMNG + SSR +R AT
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 42/201 (20%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINS----IKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
I+VGDL + + L F++ +S +V+ ++ TG S G+GFV F + A+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 148 LQTYAGMLMPNTEQPFRLNWAT------------------------------FSTGDKRS 177
+ G + + + R NWAT S D
Sbjct: 210 INEMNGKWV--SSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 267
Query: 178 DNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 237
+N +++VG+L+ +VT LH F A V+ + R KG+GFVR+ +E
Sbjct: 268 NNPQFTTVYVGNLSPEVTQLDLHRLF-----YTLGAGVIEEVRVQRDKGFGFVRYNTHDE 322
Query: 238 RSQAMNEMNGV-YCSSRPMRI 257
+ A+ N + SR +R
Sbjct: 323 AALAIQMGNAQPFLFSRQIRC 343
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 9/172 (5%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
++++VG++H + E L FA G + S K+IR + + YGFV ++ +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 150 TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPS 209
+ G + QP ++NWA +++G +R D +IFVGDL+ +VTD ML F+ YP+
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFS-VYPT 164
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
A+V++D TGRS+G+GFV F + + A++E+ G + SR +R AT
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 35/220 (15%)
Query: 66 HQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNK 125
H + Q + ++ S Q + + I+VGDL + + L CF+ + +V+ ++
Sbjct: 115 HLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQ 174
Query: 126 STGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWAT---------------- 169
TG S G+GFV F + A+ + G + + + R NWAT
Sbjct: 175 KTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQ--IRCNWATKGATSGEDKQSSDSKS 232
Query: 170 ---FSTGDKR--------SDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFD 218
++GD + +N +++VG+LA +V+ LH F + A V+ +
Sbjct: 233 VVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHS-----LGAGVIEE 287
Query: 219 ANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRI 257
R KG+GFVR+ E + A+ N Y S R M+
Sbjct: 288 VRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKC 327
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 9/172 (5%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
++++VG++H + E L FA G + S K+IR + + YGFV ++ +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 150 TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPS 209
+ G + QP ++NWA +++G +R D +IFVGDL+ +VTD ML F+ YP+
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFS-VYPT 164
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
A+V++D TGRS+G+GFV F + + A++E+ G + SR +R AT
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 38/223 (17%)
Query: 66 HQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNK 125
H + Q + ++ S Q + + I+VGDL + + L CF+ + +V+ ++
Sbjct: 115 HLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQ 174
Query: 126 STGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWAT---------------- 169
TG S G+GFV F + A+ + G + + + R NWAT
Sbjct: 175 KTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQ--IRCNWATKGATSGEDKQSSDSKS 232
Query: 170 --------------FSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 215
+ G+ +N +++VG+LA +V+ LH F + A V
Sbjct: 233 VVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHS-----LGAGV 287
Query: 216 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRI 257
+ + R KG+GFVR+ E + A+ N Y S R M+
Sbjct: 288 IEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKC 330
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
+ T++VG L + E L F G + ++ V +++ T L + YGF+E+ S A+ +
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYP 208
+ ++ +P R+N A+ DK+S +V ++F+G+L DV + +L++TF+
Sbjct: 84 KVLN--MIKLHGKPIRVNKAS---QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGV 137
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
K++ D +TG S+G+GF+ + A+ M G Y S+R + + A
Sbjct: 138 IASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
I++ +L +D LH F+S G I S KV + S+G S+GYGFV++ + +A+K ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVK 211
GML+ N +Q + + D ++ +++V +LA TD L F +Y +
Sbjct: 185 NGMLL-NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG-EYGKIT 242
Query: 212 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG 247
+A V+ D G+SKG+GFV F + ++ ++A+ +NG
Sbjct: 243 SAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNG 277
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 95/170 (55%), Gaps = 7/170 (4%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N +++VGDL + ++ L F +G + +++V R+ T S GYG+V F + A + +
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYP 208
Q +P +P R+ ++ +RS +IF+ +L + LH+TF++ +
Sbjct: 95 QELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FG 148
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
++ + KV D+ +G+SKGYGFV++ ++ +A+ ++NG+ + + + +G
Sbjct: 149 NIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG 197
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 77 PSHSHQGSSAADNKT----IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEG 132
P Q + NKT ++V +L ++ L F G+I S V+++ G S+G
Sbjct: 198 PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKG 256
Query: 133 YGFVEFYSHSTAEKVLQT-----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVP 181
+GFV F + A + +++ Y G +E+ L + +D
Sbjct: 257 FGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQ 316
Query: 182 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 241
+++V +L ++D L E F+ + +V ++KV+ D N G SKG GFV F E ++A
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFS-PFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEA 374
Query: 242 MNEMNGVYCSSRPMRIGAA 260
M++++G S+P+ + A
Sbjct: 375 MSQLSGKMIESKPLYVAIA 393
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 168 ATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGY 227
A ++G + + S++VGDL +VTD+ L + F + +V +V D T RS GY
Sbjct: 21 APATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFG-QMGTVVTVRVCRDLVTRRSLGY 79
Query: 228 GFVRFGDDNERSQAMNEMNGVYCSSRPMRI 257
G+V F + + ++A+ E+N + +P+R+
Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRV 109
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 26/205 (12%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
+ S +AD K ++VG+L +D L + F S G + ++VI +K TG S G+GFV S
Sbjct: 83 KEQSFSADLK-LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWA--------TFSTGDKRSDNVPDLS-------- 184
S E Q + G + +P R+N FS G + S
Sbjct: 142 VSEVEAAAQQFNGYELDG--RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSG 199
Query: 185 ------IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 238
++VG+L+ V D L F+ + V+A +V++D ++GRSKG+GFV + E
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEA-RVIYDRDSGRSKGFGFVTYDSSQEV 258
Query: 239 SQAMNEMNGVYCSSRPMRIGAATPR 263
A+ ++G R +R+ A R
Sbjct: 259 QNAIKSLDGADLDGRQIRVSEAEAR 283
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 85 SAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA 144
++ + ++VG+L + + + L + F G + ++++ +K T S G+GFV S A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 145 EKVLQTYAGMLMPNTEQPFRLNWATFSTGDK--------RSDNVPDL----SIFVGDLAG 192
++ +Q + + + ++N+ G + R +N + ++ G+L
Sbjct: 171 KEAMQMFNSSQIGG--RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGW 228
Query: 193 DVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSS 252
++T L + F ++ P V AKV+++ NTGRS+G+GF+ F A+ MNGV
Sbjct: 229 NLTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEG 287
Query: 253 RPMRIGAATPRK 264
R +R+ A+ R+
Sbjct: 288 RALRLNLASERE 299
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
++ ++VG+L + ++ L F G + +VI N+ T S G+GFV S AE
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 147 VLQTY------AGMLMPNTEQPFRLNWATFSTGDKRSDNV--PDLSIFVGDLAGDVTDTM 198
++ + +L N P + +R+ V P ++VG+L DV +
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR-------GSRPERAPRVYEPAFRVYVGNLPWDVDNGR 259
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
L + F+ ++ V A+VV+D TGRS+G+GFV D +E ++A++ ++G R +R+
Sbjct: 260 LEQLFS-EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 259 AATPR 263
A R
Sbjct: 319 VAEER 323
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 13/183 (7%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D+ ++V +L + ++ LH F+ G ++S+ V+R+ G S G+GFV F + A+K
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKA 258
Query: 148 LQTYAGMLMPNTE----QPFRLNWATFSTGDKRSDNV---PDL---SIFVGDLAGDVTDT 197
+++ G+ + + + + + + K SDN P++ +++V +L+ + +T
Sbjct: 259 MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNET 318
Query: 198 MLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRI 257
L E F Y + +AKV+ N GRSKG+GFV F + E QA +NG +P+ +
Sbjct: 319 RLREIFGC-YGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 258 GAA 260
A
Sbjct: 377 RVA 379
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++V +L + + L R F G I S KV+ + G S+G+GFV+F + +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKR---SDNVPDLSIFVGDLAGDVTDTMLHETFANKYP 208
G ++ +L A F D+R + N +++V +L VTD LH F+ +Y
Sbjct: 172 HGSMVYGK----KLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFS-QYG 226
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
+V + V+ D GRS+G+GFV F + +AM + G+ S+ + +G A +
Sbjct: 227 TVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKK 280
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDL + E L F+ + S+ + RN TG S Y ++ F S +A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
+ + R+ W+ +R +++V +L +T + L F + S+
Sbjct: 82 LNHSDLKG--KAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC-PFGSI 138
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG 247
+ KVV G+SKG+GFV+F + A + ++G
Sbjct: 139 LSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHG 173
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
+++ +L +D L+ F+S G I S KV + G S+GYGFV+F TA+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 152 AGMLMPNTEQPFRLNWATFSTGDK-RSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPS 209
GML+ N +Q F ++ + S VP + ++V +L ++TD L +TF KY
Sbjct: 207 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGD 264
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+ +A VV +G S+ +GFV F + A+ +MNG+ + +G A
Sbjct: 265 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 314
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 95/172 (55%), Gaps = 12/172 (6%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N +++VGDL ++E++L F + +++++V R+ T S GY +V F + A + +
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 149 QT--YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANK 206
++ YA P ++P R+ S D + ++F+ +L + + L+ETF++
Sbjct: 117 ESLNYA----PIRDRPIRI---MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSS- 168
Query: 207 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ ++ + KV D GRSKGYGFV+F + A++++NG+ + + + +G
Sbjct: 169 FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + ++ L + F G+I+S V++++S G S +GFV F S A ++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
Y G +++ L R + + ++++ +L V D L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
E F+ +Y +V + KV+ ++ G S+G+GFV + + E AM EMNG +P+ + A
Sbjct: 360 EMFS-EYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
+++ +L +D L+ F+S G I S KV + G S+GYGFV+F TA+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 152 AGMLMPNTEQPFRLNWATFSTGDK-RSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPS 209
GML+ N +Q F ++ + S VP + ++V +L ++TD L +TF KY
Sbjct: 207 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGD 264
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+ +A VV +G S+ +GFV F + A+ +MNG+ + +G A
Sbjct: 265 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 314
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 95/172 (55%), Gaps = 12/172 (6%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N +++VGDL ++E++L F + +++++V R+ T S GY +V F + A + +
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 149 QT--YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANK 206
++ YA P ++P R+ S D + ++F+ +L + + L+ETF++
Sbjct: 117 ESLNYA----PIRDRPIRI---MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSS- 168
Query: 207 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ ++ + KV D GRSKGYGFV+F + A++++NG+ + + + +G
Sbjct: 169 FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + ++ L + F G+I+S V++++S G S +GFV F S A ++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
Y G +++ L R + + ++++ +L V D L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
E F+ +Y +V + KV+ ++ G S+G+GFV + + E AM EMNG +P+ + A
Sbjct: 360 EMFS-EYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 82 QGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSH 141
Q A I++G LH ++ F GEI ++R++ TG G+GF+ F
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 142 STAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHE 201
S +KV++ + N +Q G +S ++ IFVG + VT+ L +
Sbjct: 71 SVVDKVIED---THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
Query: 202 TFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
FA KY +V +V+ D T RS+G+GFV F + + +++ N + + + I A
Sbjct: 128 FFA-KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAE 186
Query: 262 PRK 264
P+K
Sbjct: 187 PKK 189
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDL + ++ L F G++ S++V R+ +T S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
M + R +S D +IF+ +L + LHETF+ P +
Sbjct: 106 LNFMALNG-----RAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-I 159
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ KV D +G+SKGYGFV++ D A++++NG+ + + + +G
Sbjct: 160 LSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
I++ +L +D LH F++ G I S KV + S G S+GYGFV++ + A+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVK 211
GML+ N +Q + + D + V +++V +L+ ++D L++ F V
Sbjct: 194 NGMLL-NDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF--GVT 250
Query: 212 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+ V+ G+SKG+GFV F + ++ ++A++ +NG + +G A
Sbjct: 251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + + L++ F G S ++R+ G S+G+GFV F + A + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
+ G +E+ L + + +D +++V +L VTD L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
E FA + ++ + KV+ D +G S+G GFV F E ++A+ EMNG ++P+ + A
Sbjct: 345 EHFA-PFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDL + ++ L F G++ S++V R+ +T S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
M + R +S D +IF+ +L + LHETF+ P +
Sbjct: 106 LNFMALNG-----RAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-I 159
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ KV D +G+SKGYGFV++ D A++++NG+ + + + +G
Sbjct: 160 LSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 4/169 (2%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
I++ +L +D LH F++ G I S KV + S G S+GYGFV++ + A+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVK 211
GML+ N +Q + + D + V +++V +L+ ++D L++ F V
Sbjct: 194 NGMLL-NDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF--GVT 250
Query: 212 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+ V+ G+SKG+GFV F + ++ ++A++ +NG + +G A
Sbjct: 251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + + L++ F G S ++R+ G S+G+GFV F + A + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
+ G +E+ L + + +D +++V +L VTD L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
E FA + ++ + KV+ D +G S+G GFV F E ++A+ EMNG ++P+ + A
Sbjct: 345 EHFA-PFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 60 QAYMPYHQYQQQVPMHVPSHSHQGSSAAD----NKTIWVGDLHHWMDENYLHRCFASIGE 115
Q P Q QVP+ +P S AD N +++ GDL + E +L F +
Sbjct: 17 QVPSPTAQTSVQVPVSIPLPSP--VVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVAN 74
Query: 116 INSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDK 175
+ S++V R+++ S GY ++ F + + A + ++ A P ++P R+ S D
Sbjct: 75 VVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME--ALNYTPLFDRPIRI---MLSNRDP 128
Query: 176 RSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDD 235
+ +IF+ +L + + L ETF++ + ++ + KV D TGRSKGYGFV+F +
Sbjct: 129 STRLSGKGNIFIKNLDASIDNKALFETFSS-FGTILSCKVAMDV-TGRSKGYGFVQFEKE 186
Query: 236 NERSQAMNEMNGVYCSSRPMRIG 258
A++++NG+ + + + +G
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVG 209
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + E+ L + F G I+S V+R++S G S +GFV F A ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKM 289
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
Y G +E+ L R + ++++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
E F+ +Y +V ++KV+ + G S+G+GFV + + E +A++EMNG +P+ I A
Sbjct: 350 EMFS-EYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++VG+L + +D L F G + +VI N+ T S G+GFV + AEK ++ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDL-----SIFVGDLAGDVTDTMLHETFANK 206
+ RL + R + P + I+VG+L DV L F+ +
Sbjct: 175 NSFEVNGR----RLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS-E 229
Query: 207 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
+ V A+VV D TGRS+G+GFV+ ++NE + A+ ++G R +++ A R
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 87/168 (51%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDLH + E L+ FA + S+++ ++ S+G S YG+ F S A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
L+ + R+ W+ + D R + V + +FV +L VT+ +L + F K+ ++
Sbjct: 85 KNNSLLNG--KMIRVMWSVRAP-DARRNGVGN--VFVKNLPESVTNAVLQDMF-KKFGNI 138
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ KV G+S+GYGFV+F ++ A+ +N + + + +G
Sbjct: 139 VSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG 185
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 65 YHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMD---------------------E 103
+ Q++Q+ H + + AD K I+VG D E
Sbjct: 156 FVQFEQEDAAHAAIQTLNSTIVAD-KEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSE 214
Query: 104 NYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT-----------YA 152
+ L FA G+I S+ + ++++ L GY FV F + A + +T Y
Sbjct: 215 DLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Query: 153 GMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVK 211
G E+ +L F + + +S I+V ++ VT+ L + F+ + ++
Sbjct: 274 GRAQKKAERE-QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFS-QCGTIT 331
Query: 212 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
+ K++ D G+SKG+GFV F E A+ +G +P+ + A ++
Sbjct: 332 STKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 182 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 241
D +F GDL +V D +L + FA ++P+ AKV+ D TG++KGYGFV F + + + A
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAFA-RFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 242 MNEMNGVYCSSRPMRI 257
+ EMNG Y +RP+++
Sbjct: 195 LKEMNGKYVGNRPIKL 210
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
Query: 78 SHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVE 137
S H G I+VG L + F GEI +++++ TG G+GFV
Sbjct: 30 SQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVT 89
Query: 138 FYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDT 197
+ S +KV+Q ++ E + + S+ D ++ IFVG + V D
Sbjct: 90 YADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKK-----IFVGGIPSSVDDD 144
Query: 198 MLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRI 257
E F ++ +K +++ D +TGRS+G+GFV + ++ + + N + S + I
Sbjct: 145 EFKEFFM-QFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Query: 258 GAATPRK 264
A P+K
Sbjct: 204 KKAEPKK 210
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 19/191 (9%)
Query: 85 SAADN---KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSH 141
SAAD ++V +L ++ L F G I+S V+R+ G S +GFV F +
Sbjct: 217 SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENP 275
Query: 142 STAEKVLQT-----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPD-LSIFVGD 189
A + ++ Y G +E+ L+ + G N D L+++V +
Sbjct: 276 EDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSR-RYEQGSSDGGNKFDGLNLYVKN 334
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVY 249
L VTD L E FA ++ ++ + KV+ D +G SKG GFV F +E S+ +NEMNG
Sbjct: 335 LDDTVTDEKLRELFA-EFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKM 392
Query: 250 CSSRPMRIGAA 260
+P+ + A
Sbjct: 393 VGGKPLYVALA 403
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 25/177 (14%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDL + ++ L+ F + ++ S++V R+ +T S GYG+V + + AEK +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ- 105
Query: 151 YAGMLMPNTEQPFRLNWA---------TFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHE 201
+LN++ T+S+ D + ++FV +L V + LHE
Sbjct: 106 -------------KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHE 152
Query: 202 TFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
F+ ++ + KV D + G+S+GYGFV+F ++ A+ ++NG + + + +G
Sbjct: 153 AFSG-CGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 86 AADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAE 145
AA N ++ G+L + +D L + ++V+ N+ TG S G+ FV +
Sbjct: 81 AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCN 140
Query: 146 KVLQTYAGMLMPNTE---QPFRLNWATFSTGDKRSDNVPDL------SIFVGDLAGDVTD 196
++ G TE + ++N+A DK N L +FVG+L+ VT
Sbjct: 141 IIIDNLDG-----TEYLGRALKVNFA-----DKPKPNKEPLYPETEHKLFVGNLSWTVTS 190
Query: 197 TMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMR 256
L F + V A+VVFD +TGRS+GYGFV + E A+ ++G R +R
Sbjct: 191 ESLAGAF-RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 249
Query: 257 IGAATPRK 264
+ A +K
Sbjct: 250 VNLAQGKK 257
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++V +L +D L F++ G++ S KV R+ S G+S+GYGFV+FYS + +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS-GVSKGYGFVQFYSDLSVYTACNFH 91
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVK 211
G L+ N ++ F + + + +++V +L TD L F ++ +
Sbjct: 92 NGTLIRNQH----IHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFG-EFGEIT 146
Query: 212 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+A V+ D G+S+ +GFV F A+ +MNGV + + +G A
Sbjct: 147 SAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++V +L + L R F GEI S V+++ G S +GFV F A ++
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 152 AGMLMPNTEQPF-RLNWATFSTGDKRSD-----------NVPDLSIFVGDLAGDVTDTML 199
G+++ E R T T D ++ ++++V +L V +T L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 200 HETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGA 259
E F+ ++ ++ + KV+ +N G SKG GFV F E S+AM +MNG ++P+ +
Sbjct: 240 EELFS-EFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 260 A 260
A
Sbjct: 298 A 298
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 82 QGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSH 141
Q A I++G LH ++ F GEI ++R++ TG G+GF+ F
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 142 STAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHE 201
S +KV++ + N +Q G +S ++ IFVG + VT+ L +
Sbjct: 71 SVVDKVIEDTH---VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
Query: 202 TFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMN 246
FA KY +V +V+ D T RS+G+GFV F + + +++ N
Sbjct: 128 FFA-KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DEN L F++ GE+ + V+R K+TG G+GFV F + ++
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62
Query: 147 VLQTY---------AGMLMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVT 195
VLQ M EQ TF+ NV IFVG L +T
Sbjct: 63 VLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 232
F Y V A ++ D T R +G+GFV F
Sbjct: 123 SDEFRAYF-ETYGPVSDAVIMIDQTTQRPRGFGFVSF 158
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D ++VG + DE+ L F + GE++ V+R+K TG G+GFV F S ++
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 147 VLQTYAGM---------LMPNTEQPF-----RLNWATFSTGDKRSDNVPDLSIFVGDLAG 192
VLQ + M EQ LN + S GD + IFVG L
Sbjct: 63 VLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT---KKIFVGGLPP 119
Query: 193 DVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 232
+TD + F Y V +++D T R +G+GFV F
Sbjct: 120 TLTDEEFRQYF-EVYGPVTDVAIMYDQATNRPRGFGFVSF 158
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
+ ++V +L M N + F G +N++++IR K G + G+ FV S A+ +
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAID 153
Query: 150 TY-----AGMLM----------PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDV 194
+ +G ++ P + P L + + GD R ++V +LA
Sbjct: 154 KFDTFQVSGRIISVSFARRFKKPTPKSPNDL--PSPAPGDTRH------KLYVSNLAWKA 205
Query: 195 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 254
T L E F + +A+VVF GRS GYGFV F E A+ ++NG RP
Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRP 265
Query: 255 MRI 257
+ +
Sbjct: 266 ITL 268
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL--- 148
+++G + E+ L F S GE+ ++++++TG + G+GFV F + AE+V+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS----IFVGDLAGDVTDTMLHETFA 204
G ++ + R + F+ + P S IFVG LA VT+ + FA
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFA 127
Query: 205 NKYPSVKAAKVVFDANTGRSKGYGFVRFGD----DNERSQAMNEMNG 247
++ + V++D T R +G+GF+ + D + +E+NG
Sbjct: 128 -QFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG 173
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL--- 148
+++G + E+ L F S GE+ ++++++TG + G+GFV F + AE+V+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS----IFVGDLAGDVTDTMLHETFA 204
G ++ + R + F+ + P S IFVG LA VT+ + FA
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFA 127
Query: 205 NKYPSVKAAKVVFDANTGRSKGYGFVRFGD----DNERSQAMNEMNG 247
++ + V++D T R +G+GF+ + D + +E+NG
Sbjct: 128 -QFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG 173
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 62 YMPYHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKV 121
++PY + + P+ S AA + +++G++ + L + G + ++V
Sbjct: 53 FIPYAVTETE---EKPAALDPSSEAA--RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQV 107
Query: 122 IRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVP 181
+ +K +G S +GF S A V++ G + E ++N +K + P
Sbjct: 108 MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGRE--IKVNIT-----EKPIASSP 160
Query: 182 DLSI---------------FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKG 226
DLS+ +VG+LA VT ML F+ K V +AKV T +S G
Sbjct: 161 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEK-GKVVSAKVSRVPGTSKSTG 219
Query: 227 YGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+GFV F + + A+ +N + +R+ A
Sbjct: 220 FGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 62 YMPYHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKV 121
++PY + + P+ S AA + +++G++ + L + G + ++V
Sbjct: 53 FIPYAVTETE---EKPAALDPSSEAA--RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQV 107
Query: 122 IRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVP 181
+ +K +G S +GF S A V++ G + E ++N +K + P
Sbjct: 108 MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGRE--IKVNIT-----EKPIASSP 160
Query: 182 DLSI---------------FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKG 226
DLS+ +VG+LA VT ML F+ K V +AKV T +S G
Sbjct: 161 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEK-GKVVSAKVSRVPGTSKSTG 219
Query: 227 YGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+GFV F + + A+ +N + +R+ A
Sbjct: 220 FGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G L+ D L + FA+ + V AKV+ D TGRS+G+GFV F D+ + A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 245 MNGVYCSSRPMRIGAATPR 263
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 170 FSTGD-----KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRS 224
F+ GD +R+ PDL +FVG+L+ +V L + F + +V+ +V++D TGRS
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRS 139
Query: 225 KGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 262
+G+GFV E A + NG RP+R+ A P
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 245 MNGVYCSSRPMRIGAATPR 263
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 170 FSTGD-----KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRS 224
F+ GD +R+ PDL +FVG+L+ +V L + F + +V+ +V++D TGRS
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRS 139
Query: 225 KGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 262
+G+GFV E A + NG RP+R+ A P
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 245 MNGVYCSSRPMRIGAATPR 263
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 170 FSTGD-----KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRS 224
F+ GD +R+ PDL +FVG+L+ +V L + F + +V+ +V++D TGRS
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRS 139
Query: 225 KGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 262
+G+GFV E A + NG RP+R+ A P
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
++VG+L+ V D L F N+ V A+V++D ++GRSKG+GFV E +A+N
Sbjct: 280 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 245 MNGVYCSSRPMRIGAATPR 263
+NG R +R+ A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++VG + E + F G + + +I++K TG +G FV++ + A++ ++
Sbjct: 47 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 106
Query: 152 AGML-MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
+ +P P ++ +A G++ + +FVG L T+ + E F ++ V
Sbjct: 107 HNQITLPGGTGPVQVRYAD---GERERIGTLEFKLFVGSLNKQATEKEVEEIFL-QFGHV 162
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYC---SSRPMRIGAATPRK 264
+ ++ D +S+G GFV++ A++ +NG Y ++P+ + A P++
Sbjct: 163 EDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 218
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++VG + E + F G + + +I++K TG +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 152 AGML-MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
+ +P P ++ +A G++ + +FVG L T+ + E F ++ V
Sbjct: 182 HNQITLPGGTGPVQVRYAD---GERERIGTLEFKLFVGSLNKQATEKEVEEIFL-QFGHV 237
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYC---SSRPMRIGAATPRK 264
+ ++ D +S+G GFV++ A++ +NG Y ++P+ + A P++
Sbjct: 238 EDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+FVG L+ D+ L + F + + V A V+ D TGRS+G+GFV F ++ + A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 77 PSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFV 136
P S GS + ++VG L D++ L + F S GE+ VI ++ TG S G+GFV
Sbjct: 22 PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Query: 137 EFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWAT 169
F +A ++ G + + R+N AT
Sbjct: 82 SFSCEDSANNAIKEMDGKELNG--RQIRVNLAT 112
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+FVG L+ D+ L + F + + V A V+ D TGRS+G+GFV F ++ + A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 77 PSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFV 136
P S GS + ++VG L D++ L + F S GE+ VI ++ TG S G+GFV
Sbjct: 22 PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Query: 137 EFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWAT 169
F +A ++ G + + R+N AT
Sbjct: 82 SFSCEDSANNAIKEMDGKELNG--RQIRVNLAT 112
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++VG + E + F G + + +I++K TG +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 152 AGML-MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
+ +P P ++ +A G++ + +FVG L T+ + E F ++ V
Sbjct: 182 HNQITLPGGTGPVQVRYAD---GERERIGTLEFKLFVGSLNKQATEKEVEEIFL-QFGHV 237
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYC---SSRPMRIGAATPRK 264
+ ++ D +S+G GFV++ A++ +NG Y ++P+ + A P++
Sbjct: 238 EDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DE L F++ G++ ++R+++TG + G+GF+ F +E+
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSER 62
Query: 147 VLQ---------TYAGMLMPNTEQ--------PFRLNWATFSTGDKRSDNVPDLSIFVGD 189
V+ A +P +Q P L G + IFVG
Sbjct: 63 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGG 116
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM----NEM 245
L +T+ F +++ ++ V++D NT R +G+GF+ F D+ + + +E+
Sbjct: 117 LPSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
Query: 246 NG 247
NG
Sbjct: 176 NG 177
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DE L F++ G++ ++R+++TG + G+GF+ F +E+
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSER 62
Query: 147 VLQ---------TYAGMLMPNTEQ--------PFRLNWATFSTGDKRSDNVPDLSIFVGD 189
V+ A +P +Q P L G + IFVG
Sbjct: 63 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGG 116
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM----NEM 245
L +T+ F +++ ++ V++D NT R +G+GF+ F D+ + + +E+
Sbjct: 117 LPSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
Query: 246 NG 247
NG
Sbjct: 176 NG 177
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DE L F++ G++ ++R+++TG + G+GF+ F +E+
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSER 62
Query: 147 VLQ---------TYAGMLMPNTEQ--------PFRLNWATFSTGDKRSDNVPDLSIFVGD 189
V+ A +P +Q P L G + IFVG
Sbjct: 63 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGG 116
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM----NEM 245
L +T+ F +++ ++ V++D NT R +G+GF+ F D+ + + +E+
Sbjct: 117 LPSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
Query: 246 NG 247
NG
Sbjct: 176 NG 177
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DE L F++ G++ ++R+++TG + G+GF+ F +E+
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSER 62
Query: 147 VLQ---------TYAGMLMPNTEQ--------PFRLNWATFSTGDKRSDNVPDLSIFVGD 189
V+ A +P +Q P L G + IFVG
Sbjct: 63 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGG 116
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM----NEM 245
L +T+ F +++ ++ V++D NT R +G+GF+ F D+ + + +E+
Sbjct: 117 LPSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
Query: 246 NG 247
NG
Sbjct: 176 NG 177
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+DN +++G + +E L F+S GE+ ++++++TG + G+GFV F + AE
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 147 VLQ---------TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS--IFVGDLAGDVT 195
V+ A +P +Q +N + S+ + S P + IFVG L VT
Sbjct: 63 VITEKHNIDGRLVEAKKAVPRDDQNM-VNRSN-SSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
++ +T+ ++ + V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 121 ESDF-KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY--DSEEAVEKVLLKTFHELNG 175
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 26/180 (14%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+DN +++G + +E L F+S GE+ ++++++TG + G+GFV F + AE
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 147 VLQ---------TYAGMLMPNTEQPF--RLNWATFSTGDKRSDNVPDLS--IFVGDLAGD 193
V+ A +P +Q R N ++ + S P + IFVG L
Sbjct: 63 VITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSI----QGSPGGPGRTRKIFVGGLPSS 118
Query: 194 VTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
VT++ +T+ ++ + V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 119 VTESDF-KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY--DSEEAVEKVLLKTFHELNG 175
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 75 HVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYG 134
H H H SS + ++VG + F GE+ ++ ++ TG G+G
Sbjct: 51 HSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFG 110
Query: 135 FVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS----IFVGDL 190
FV F + AEKVL+ ++ + + + T GDK +D + +S IFVG L
Sbjct: 111 FVTFADSAVAEKVLE--EDHVIDDRKVDLK---RTLPRGDKDTD-IKAVSKTRKIFVGGL 164
Query: 191 AGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYC 250
+ + L F Y + ++++D +TGRS+G+GFV F ++ + ++
Sbjct: 165 PPLLEEDELKNYFC-VYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHEL 223
Query: 251 SSRPMRIGAATPRK 264
+ + I A P++
Sbjct: 224 GDKQVEIKRAEPKR 237
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 246 NGVYCSSRPMRIGAATPR 263
NG R + + A R
Sbjct: 68 NGKELDGRVITVNEAQSR 85
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++VG + M E L F +N + +I+ K+T G F+ + A+KV+ ++
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 152 -AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS------IFVGDLAGDVTDTMLHETFA 204
+P P ++ +A G+ +V D S +FVG L +V++T + F+
Sbjct: 74 HNKKTLPGASSPLQVKYA---DGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFS 130
Query: 205 NKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG 247
+Y ++K +++ + SKG F+++ + AM +NG
Sbjct: 131 -EYGTIKDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEALNG 171
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 66 HQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNK 125
Q QV + PS Q + +++G + + MDE+ L F GE+ +VI ++
Sbjct: 17 KQLNAQVSLSSPSL-FQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDR 75
Query: 126 STGLSEGYGFVEFYSHSTAEKVLQTYAG 153
TG S G+GFV F S A +Q G
Sbjct: 76 ETGRSRGFGFVTFTSSEAASSAIQALDG 103
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G L+ V + L + F++ + V ++ +D +GRS+G+GFV F ++ + A +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G RP+RI A R
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 85 SAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA 144
+A +KT++ +L ++ + F GE+ ++ N+ G G+G VEF S A
Sbjct: 292 AAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEA 351
Query: 145 EKVLQTYAGMLMPNTEQPFRLNWA------------TFSTGDKRS--DNVPDLSIFVGDL 190
+K L+ + L+ + RL+ A T +G+ RS D + IFV
Sbjct: 352 QKALEFHGRPLLG---REIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGF 408
Query: 191 AGDVTDTMLHETFANKYPS---VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN--EM 245
+++ + T + S +K V D +TG SKG ++ F + E++ +N +M
Sbjct: 409 DASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSDM 468
Query: 246 NGVY 249
G +
Sbjct: 469 GGGF 472
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 88/182 (48%), Gaps = 12/182 (6%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++++ S+G G++EFY +
Sbjct: 166 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 225
Query: 148 L----QTYAG---MLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
+ Q + G M+ P+ + N A ++ D ++VG+L ++++ L
Sbjct: 226 IALSGQLFLGQPVMVKPSEAEK---NLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLR 282
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRIGA 259
+ F P V+ ++ D TG+ KG+GF++F A +NG + + R +++ +
Sbjct: 283 QIFEAFGP-VELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSS 341
Query: 260 AT 261
+
Sbjct: 342 VS 343
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 79 HSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEF 138
+SH S +++G L + E L IGEI +++++++ +G S+GY FV F
Sbjct: 105 YSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164
Query: 139 YSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ A+K ++ + F+ S + ++ +F+G++ + T+
Sbjct: 165 KTKDVAQKAIEEL-------HSKEFKGKTIRCSLSETKN------RLFIGNIPKNWTEDE 211
Query: 199 LHETFANKYPSVKAAKVVFD-ANTGRSKGYGFVRF 232
+ + P V+ +++ D NT R++G+ FV +
Sbjct: 212 FRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 79 HSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEF 138
+SH S +++G L + E L IGEI +++++++ +G S+GY FV F
Sbjct: 105 YSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164
Query: 139 YSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ A+K ++ + F+ S + ++ +F+G++ + T+
Sbjct: 165 KTKDVAQKAIEEL-------HSKEFKGKTIRCSLSETKN------RLFIGNIPKNWTEDE 211
Query: 199 LHETFANKYPSVKAAKVVFD-ANTGRSKGYGFVRF 232
+ + P V+ +++ D NT R++G+ FV +
Sbjct: 212 FRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 246 NGVYCSSRPMRIGAA 260
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 246 NGVYCSSRPMRIGAA 260
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +++G L ++++ L F+S GEI KVI+++ TGLS+GYGFV++ A
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 148 LQTYAG 153
+Q G
Sbjct: 538 VQAMNG 543
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +++G L ++++ L F+S GEI KVI+++ TGLS+GYGFV++ A
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 148 LQTYAG 153
+Q G
Sbjct: 538 VQAMNG 543
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +++G L ++++ L F+S GEI KVI+++ TGLS+GYGFV++ A
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 148 LQTYAG 153
+Q G
Sbjct: 538 VQAMNG 543
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 174 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 233
D+ +D + IFVG L+ DVT+ L TF ++Y + +++ +TGR +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 234 DDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
D A+ M+G ++ + + A P+
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 174 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 233
D+ +D + IFVG L+ DVT+ L TF ++Y + +++ +TGR +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 234 DDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
D A+ M+G ++ + + A P+
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 181 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 240
P+ F+G LA +D L + F KY + AKVV D +GRS+G+GF+ F + +
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 241 AMNEMNGVYCSSRPMRIGAATP 262
A+ MNG+ R + + A P
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQP 85
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA D L FA +Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 246 NGVYCSSRPMRIGAA 260
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA D L FA +Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 246 NGVYCSSRPMRIGAA 260
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 79 HSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEF 138
+SH S +++G L + E L IGEI +++++++ +G S+GY FV F
Sbjct: 105 YSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164
Query: 139 YSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS--IFVGDLAGDVTD 196
+ A+K ++ L+ F + ++ LS +F+G++ + T+
Sbjct: 165 KTKDVAQKAIE--------------ELHSKEFKASSTANCSL-SLSNRLFIGNIPKNWTE 209
Query: 197 TMLHETFANKYPSVKAAKVVFD-ANTGRSKGYGFVRF 232
+ + P V+ +++ D NT R++G+ FV +
Sbjct: 210 DEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
IFVG L+ +VTD L F +++ + +++ + +TGRS+G+GF+ F D +++ E
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G R + + A P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
IFVG ++ + L E F+ KY V AK++ D TGRS+G+ FV F E S AM +
Sbjct: 36 IFVGGISYSTDEFGLREAFS-KYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 245 MNGVYCSSRPMRIGAAT 261
++G R +R+ AT
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 28/192 (14%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++ + S G G+VEFY +
Sbjct: 180 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 239
Query: 148 L----QTYAG---MLMPNTEQPFRLNWAT-----------FSTGDKRSDNVPDLSIFVGD 189
+ Q G M+ P+ + + T +S G +R ++VG+
Sbjct: 240 IALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR--------LYVGN 291
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVY 249
L ++++ L + F + + SV+ +V D TG KG+GFV+F + A+N +
Sbjct: 292 LHINMSEDDLRKVFES-FGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLE 349
Query: 250 CSSRPMRIGAAT 261
+ R +++ A T
Sbjct: 350 IAGRAIKVSAVT 361
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 28/192 (14%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++ + S G G+VEFY +
Sbjct: 229 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 288
Query: 148 L----QTYAG---MLMPNTEQPFRLNWAT-----------FSTGDKRSDNVPDLSIFVGD 189
+ Q G M+ P+ + + T +S G +R ++VG+
Sbjct: 289 IALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR--------LYVGN 340
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVY 249
L ++++ L + F + + SV+ +V D TG KG+GFV+F + A+N +
Sbjct: 341 LHINMSEDDLRKVFES-FGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLE 398
Query: 250 CSSRPMRIGAAT 261
+ R +++ A T
Sbjct: 399 IAGRAIKVSAVT 410
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 173 GDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRF 232
G+ + + IFVG LA + + F ++ + A V+ D NTGRSKGYGFV F
Sbjct: 12 GNNNTTDTKLTKIFVGGLAWETQRDTMRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTF 70
Query: 233 GDDNERSQAMNEMNGVYCSSRP----MRIGAATPR 263
+ +A MN V R +GA PR
Sbjct: 71 KEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPR 105
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA D L TF+ ++ V +K++ D +GRS+G+GFV F D+ A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 246 N 246
N
Sbjct: 68 N 68