Miyakogusa Predicted Gene

Lj1g3v1596960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1596960.1 tr|G7IR61|G7IR61_MEDTR Meiotic recombination
OS=Medicago truncatula GN=MTR_2g081100 PE=3 SV=1,87.32,0,seg,NULL;
DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11A,DNA repair protein Mre11;
Mre11_DNA_bind,Mre11, ,NODE_38911_length_2268_cov_37.260582.path1.1
         (692 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54260.1 | Symbols: MRE11, ATMRE11 | DNA repair and meiosis p...   965   0.0  

>AT5G54260.1 | Symbols: MRE11, ATMRE11 | DNA repair and meiosis
           protein (Mre11) | chr5:22032702-22037749 FORWARD
           LENGTH=720
          Length = 720

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/698 (69%), Positives = 544/698 (77%), Gaps = 6/698 (0%)

Query: 1   MEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDLFHENKPTRSTLVKAIEILRRYCLN 60
           MEKDE+RRHDSF+AFEEICSIAEEKQVDF+LLGGDLFHENKP+R+TLVKAIEILRR+CLN
Sbjct: 23  MEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHENKPSRTTLVKAIEILRRHCLN 82

Query: 61  DRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSA 120
           D+PV FQVVSDQT+NFQN FG VNYEDPHFNVGLPVF+IHGNHDDPAGVDNLS +DILSA
Sbjct: 83  DKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAIDILSA 142

Query: 121 CNLVNYFGKTVLGGSGVGQITLHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWM 180
           CNLVNYFGK VLGGSGVGQITL+PIL+KKGST VALYGLGNIRDERLNRMFQTPHAVQWM
Sbjct: 143 CNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLGNIRDERLNRMFQTPHAVQWM 202

Query: 181 RPESQEGCQVSDWFNILVLHQNRVKMNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVS 240
           RPE QEGC VSDWFNILVLHQNRVK NPKNAI+EHFLPRFLDFIVWGHEHECL+DPQEVS
Sbjct: 203 RPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRFLDFIVWGHEHECLIDPQEVS 262

Query: 241 GMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLKSVRPFEYTEIILKDE 300
           GMGFHI+QPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPL SVRPFEYTEI+LKDE
Sbjct: 263 GMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDE 322

Query: 301 PDIDPNDQHSILEHLDKVVGKLIEKSSKQAVHRAELKLPLIRIKVDYSGFMTINPQRFGQ 360
            DIDPNDQ+SILEHLDKVV  LIEK+SK+AV+R+E+KLPL+RIKVDYSGFMTINPQRFGQ
Sbjct: 323 SDIDPNDQNSILEHLDKVVRNLIEKASKKAVNRSEIKLPLVRIKVDYSGFMTINPQRFGQ 382

Query: 361 KYVGKVANPQDILIFSKSAKKAKNEGKIDDSERLRPEELNQQNIEALVAENNLKMEILPV 420
           KYVGKVANPQDILIFSK++KK ++E  IDDSERLRPEELNQQNIEALVAE+NLKMEILPV
Sbjct: 383 KYVGKVANPQDILIFSKASKKGRSEANIDDSERLRPEELNQQNIEALVAESNLKMEILPV 442

Query: 421 NDLDIALHNFVNKDDKMAFYTCVQNNIVETRNKIAKDSDNLQFDNEDLVVKVGECLEERV 480
           NDLD+ALHNFVNKDDK+AFY+CVQ N+ ETR K+AKDSD  +F+ +DL++KVGECLEER+
Sbjct: 443 NDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDAKKFEEDDLILKVGECLEERL 502

Query: 481 KERSVLSKEPTQFTAGAQSLEDFRAAGAGSA-VSFSDDEDAMPMXXXX--XXXXXXXXXX 537
           K+RS      +QF +   + E+     +G A  SFSDDED   M                
Sbjct: 503 KDRSTRPTGSSQFLSTGLTSENLTKGSSGIANASFSDDEDTTQMSGLAPPTRGRRGSSTA 562

Query: 538 XXXXXXXXXXXXXXXXXXXXXXLKQTTLDGALGFRXXXXXXXXXXXXXIRSVAD-GGDNL 596
                                 +KQTTLD +LGFR              +S +  G D++
Sbjct: 563 NTTRGRAKAPTRGRGRGKASSAMKQTTLDSSLGFRQSQRSASAAASAAFKSASTIGEDDV 622

Query: 597 ASASSDDAIQNAVEGVDDSSE-NESKLXXXXXXXXXXXXXXSNQPSNSKRGRKSENSSVH 655
            S SS++         D SSE +ES                      SKRGRK+E+SS  
Sbjct: 623 DSPSSEEVEPEDFNKPDSSSEDDESTKGKGRKRPATTKRGRGRGSGTSKRGRKNESSSSL 682

Query: 656 RMLMXXXXXXXXXXXXVR-KRLNKSQPRVTKNYGALRR 692
             L+             R K+LNKSQPRVT+NYGALRR
Sbjct: 683 NRLLSSKDDDEDEDDEDREKKLNKSQPRVTRNYGALRR 720