Miyakogusa Predicted Gene
- Lj1g3v1583620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1583620.1 Non Chatacterized Hit- tr|H9GCF3|H9GCF3_ANOCA
Uncharacterized protein OS=Anolis carolinensis
GN=UBE4,54.55,2e-19,RING/U-box,NULL; U-box,U box domain; Modified RING
finger domain,U box domain; no description,Zinc
f,NODE_51503_length_588_cov_139.940475.path1.1
(110 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15400.1 | Symbols: | U-box domain-containing protein | chr5... 164 9e-42
>AT5G15400.1 | Symbols: | U-box domain-containing protein |
chr5:4997764-5002907 REVERSE LENGTH=1038
Length = 1038
Score = 164 bits (416), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 94/110 (85%), Gaps = 3/110 (2%)
Query: 1 MDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDASDPFNRSHLTA 60
+DAEA LGEIPDEFLDPIQYTLM+DPVILPSSRITVDRP+IQRHLLSD DPFNR+HLT+
Sbjct: 932 LDAEAALGEIPDEFLDPIQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTS 991
Query: 61 DMLIPDVELKARIEEFVRSQEMKKHGEGLSIQSSSKATIQTTNGEKMLID 110
DMLIPD+ELKA+I+EFV+S + KK G SS+K IQTTN + MLID
Sbjct: 992 DMLIPDIELKAKIDEFVKSHQSKKRTSGE--DSSNKERIQTTNSD-MLID 1038