Miyakogusa Predicted Gene

Lj1g3v1582550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1582550.1 Non Chatacterized Hit- tr|D7LZ75|D7LZ75_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,66.35,2e-18,seg,NULL; no description,Rho GTPase-activating
protein domain; RhoGAP,Rho GTPase-activating protein ,CUFF.27538.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24580.1 | Symbols: REN1 | Rho GTPase activation protein (Rho...   172   3e-43
AT5G12150.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)...    90   2e-18
AT5G12150.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)...    90   2e-18
AT5G19390.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)...    72   6e-13
AT5G19390.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)...    72   6e-13
AT5G19390.3 | Symbols:  | Rho GTPase activation protein (RhoGAP)...    72   6e-13
AT5G19390.4 | Symbols:  | Rho GTPase activation protein (RhoGAP)...    72   7e-13

>AT4G24580.1 | Symbols: REN1 | Rho GTPase activation protein
           (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE
           LENGTH=933
          Length = 933

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 187/361 (51%), Gaps = 34/361 (9%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           MRAAI ++FPEPN            TVAS KTVNRM+++AVAACMAPLLLRPLLAG+CEI
Sbjct: 314 MRAAICESFPEPNRRLLQRILMMMQTVASNKTVNRMNTNAVAACMAPLLLRPLLAGDCEI 373

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEYNTIFG-------------EGSVSPD 107
           ENDFDVGGDGS+              IVITLLEEY +IFG             EGS+SP 
Sbjct: 374 ENDFDVGGDGSMQLLQAAAAANHAQAIVITLLEEYESIFGTLTSSIINGLCLQEGSLSPG 433

Query: 108 IYTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSQESDADDDHVSE---SYSGSGE 164
           +Y+D                               GS   +D ++D  +E   SYS S  
Sbjct: 434 LYSD------SEESGSGTEEGSDDEEYDDDDDGSQGSEDYTDEEEDLENESNGSYSESAA 487

Query: 165 SD--VDNTPNKKDHDHXXXXXXXXXXXEENKAKPKLKTKSLEGSPTQPDEFKSCENLASP 222
           S+    ++ +  DH             + +K   KL + S   S  + D+ K  E++   
Sbjct: 488 SEDKYADSIDPDDHKINDNLSTESKSPKRSKEPKKLLSGSRRSSLPRHDDGKKDEDIV-- 545

Query: 223 KKSGYADHSNKPADIVGELSTDQAALHNSDFPSPTSCIRKSNTISNGPTTRHRIMGRTAA 282
                   +N     V E+ST +    NS      S  +K + +S+ P    R  GRT  
Sbjct: 546 ----VKGVNNTEVKAVVEVSTSED--KNSSTSDVASDTQKPSKLSDAPGGSKRHWGRTPG 599

Query: 283 RKNLSMESIDFS--VDEDGDGIERLEASKAELQNEIAEEVKANAKLQSHIDDQKKSLHER 340
           +KNLSMESIDFS  VDED   IERLE++K ELQ+ I EEVK+NA LQ+ ++ +KK+L+ R
Sbjct: 600 KKNLSMESIDFSVEVDEDNADIERLESTKLELQSRITEEVKSNAVLQASLERRKKALYGR 659

Query: 341 R 341
           R
Sbjct: 660 R 660


>AT5G12150.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:3924393-3930100 REVERSE LENGTH=827
          Length = 827

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           +R+AI +TFPEPN            T+ S  + NRM+SSAVAACM+PLLLRPLLAGEC++
Sbjct: 274 LRSAIIETFPEPNRRLLLRMLKMMHTITSHSSENRMTSSAVAACMSPLLLRPLLAGECDL 333

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEY-NTIFGEG 102
           E  FD  GD S               IV  LLE+Y N I  EG
Sbjct: 334 EG-FDTLGDNSAQLLAAANAANNAQAIVTALLEDYGNMINDEG 375


>AT5G12150.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:3924632-3930100 REVERSE LENGTH=772
          Length = 772

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           +R+AI +TFPEPN            T+ S  + NRM+SSAVAACM+PLLLRPLLAGEC++
Sbjct: 274 LRSAIIETFPEPNRRLLLRMLKMMHTITSHSSENRMTSSAVAACMSPLLLRPLLAGECDL 333

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEY-NTIFGEG 102
           E  FD  GD S               IV  LLE+Y N I  EG
Sbjct: 334 EG-FDTLGDNSAQLLAAANAANNAQAIVTALLEDYGNMINDEG 375


>AT5G19390.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
          Length = 870

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 63/104 (60%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           +R+AI +TFPEPN            T++S    NRM+ +AVAACMAPLLLRPLLAGEC++
Sbjct: 269 LRSAIAETFPEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLRPLLAGECDL 328

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEYNTIFGEGSV 104
           E+DFD G D S               I+  LLE+Y +IF E ++
Sbjct: 329 EDDFDGGEDNSAQLLAAANAANNAQAIITVLLEDYGSIFDEENI 372



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 255 SPTSCIRKSNTISNGPTTRHRIMGRTAARKNLSMESIDFSVDEDGDGIERLEASKAELQN 314
           SP++      T S+    R    GR +ARK  +  S D S  ED   I+RLE +K EL+ 
Sbjct: 529 SPSAKSVNKGTPSSVHAKRATFWGRGSARKISTDGSFD-SSGEDELAIQRLETTKNELRQ 587

Query: 315 EIAEEVKANAKLQSHIDDQKKSLHERR 341
            IA+E + NA LQ+ ++ +K++LHERR
Sbjct: 588 RIAKEARGNAILQASLERRKQALHERR 614


>AT5G19390.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
          Length = 870

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 63/104 (60%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           +R+AI +TFPEPN            T++S    NRM+ +AVAACMAPLLLRPLLAGEC++
Sbjct: 269 LRSAIAETFPEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLRPLLAGECDL 328

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEYNTIFGEGSV 104
           E+DFD G D S               I+  LLE+Y +IF E ++
Sbjct: 329 EDDFDGGEDNSAQLLAAANAANNAQAIITVLLEDYGSIFDEENI 372



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 255 SPTSCIRKSNTISNGPTTRHRIMGRTAARKNLSMESIDFSVDEDGDGIERLEASKAELQN 314
           SP++      T S+    R    GR +ARK  +  S D S  ED   I+RLE +K EL+ 
Sbjct: 529 SPSAKSVNKGTPSSVHAKRATFWGRGSARKISTDGSFD-SSGEDELAIQRLETTKNELRQ 587

Query: 315 EIAEEVKANAKLQSHIDDQKKSLHERR 341
            IA+E + NA LQ+ ++ +K++LHERR
Sbjct: 588 RIAKEARGNAILQASLERRKQALHERR 614


>AT5G19390.3 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6538069 FORWARD LENGTH=822
          Length = 822

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 63/104 (60%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           +R+AI +TFPEPN            T++S    NRM+ +AVAACMAPLLLRPLLAGEC++
Sbjct: 269 LRSAIAETFPEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLRPLLAGECDL 328

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEYNTIFGEGSV 104
           E+DFD G D S               I+  LLE+Y +IF E ++
Sbjct: 329 EDDFDGGEDNSAQLLAAANAANNAQAIITVLLEDYGSIFDEENI 372



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 255 SPTSCIRKSNTISNGPTTRHRIMGRTAARKNLSMESIDFSVDEDGDGIERLEASKAELQN 314
           SP++      T S+    R    GR +ARK  +  S D S  ED   I+RLE +K EL+ 
Sbjct: 529 SPSAKSVNKGTPSSVHAKRATFWGRGSARKISTDGSFD-SSGEDELAIQRLETTKNELRQ 587

Query: 315 EIAEEVKANAKLQSHIDDQKKSLHERR 341
            IA+E + NA LQ+ ++ +K++LHERR
Sbjct: 588 RIAKEARGNAILQASLERRKQALHERR 614


>AT5G19390.4 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6537143 FORWARD LENGTH=714
          Length = 714

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 63/104 (60%)

Query: 1   MRAAINDTFPEPNXXXXXXXXXXXXTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEI 60
           +R+AI +TFPEPN            T++S    NRM+ +AVAACMAPLLLRPLLAGEC++
Sbjct: 269 LRSAIAETFPEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLRPLLAGECDL 328

Query: 61  ENDFDVGGDGSIXXXXXXXXXXXXXXIVITLLEEYNTIFGEGSV 104
           E+DFD G D S               I+  LLE+Y +IF E ++
Sbjct: 329 EDDFDGGEDNSAQLLAAANAANNAQAIITVLLEDYGSIFDEENI 372



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 255 SPTSCIRKSNTISNGPTTRHRIMGRTAARKNLSMESIDFSVDEDGDGIERLEASKAELQN 314
           SP++      T S+    R    GR +ARK  +  S D S  ED   I+RLE +K EL+ 
Sbjct: 529 SPSAKSVNKGTPSSVHAKRATFWGRGSARKISTDGSFD-SSGEDELAIQRLETTKNELRQ 587

Query: 315 EIAEEVKANAKLQSHIDDQKKSLHERR 341
            IA+E + NA LQ+ ++ +K++LHERR
Sbjct: 588 RIAKEARGNAILQASLERRKQALHERR 614