Miyakogusa Predicted Gene
- Lj1g3v1561430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1561430.1 Non Chatacterized Hit- tr|I1JV48|I1JV48_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.51014 PE,83.43,0,WD AND
TETRATRICOPEPTIDE REPEAT PROTEIN 1,NULL; WD REPEAT DOMAIN-CONTAINING
FAMILY,NULL; WD40,WD40 r,CUFF.27527.1
(336 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10940.2 | Symbols: | transducin family protein / WD-40 repe... 552 e-157
AT5G10940.1 | Symbols: | transducin family protein / WD-40 repe... 549 e-156
AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 151 5e-37
AT3G45620.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 151 7e-37
AT4G38480.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 131 5e-31
AT4G35140.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 124 1e-28
AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 54 1e-07
AT2G47410.2 | Symbols: | WD40/YVTN repeat-like-containing domai... 54 1e-07
AT2G47410.1 | Symbols: | WD40/YVTN repeat-like-containing domai... 54 1e-07
AT5G49430.1 | Symbols: | WD40/YVTN repeat-like-containing domai... 54 2e-07
AT2G21390.1 | Symbols: | Coatomer, alpha subunit | chr2:9152428... 53 3e-07
AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchles... 53 3e-07
AT1G62020.1 | Symbols: | Coatomer, alpha subunit | chr1:2291981... 52 6e-07
AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Tran... 52 7e-07
AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 52 8e-07
AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 4e-06
AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 5e-06
AT5G56130.1 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repe... 49 7e-06
AT1G79990.5 | Symbols: | structural molecules | chr1:30085910-3... 48 8e-06
AT1G79990.3 | Symbols: | structural molecules | chr1:30085910-3... 48 8e-06
>AT5G10940.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:3448890-3454127 REVERSE LENGTH=754
Length = 754
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/336 (77%), Positives = 294/336 (87%), Gaps = 1/336 (0%)
Query: 1 MDSVPFRDGNIHKLLQTRYLNTRLDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNS 60
MD++ F DGNI LL TR + +V+ +Q HSSL+RRLSQ++ELEGH GCVNA+AWNS
Sbjct: 1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60
Query: 61 TGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVR 120
GS+LISGSDD RINIW+YSS+KLLHSIDTGH+ANIFCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61 NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120
Query: 121 LFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFREG 180
LFN SRLSGR D AI P ALYQCH+RRVKKLAVE GNPNVVWSASEDGTLRQHDFRE
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180
Query: 181 TTCPPAGSSHQECRNVLLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFA 240
T+CPPAG++HQECR+VLLDLRSGAKR+LADPPKQ L+LKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240
Query: 241 RLYDRRMLPPLSSCRQRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSG 300
RLYDRRMLPPL+S R+RM PPPCVNYFCPMHLS+RG +LHLTHVTFSP+G EVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300
Query: 301 EHVYLMNVNNAGVNELQYTPEDVSKLMTYSPTINGV 336
EHVYLMNVNN G +QYTP DV L ++S ++ V
Sbjct: 301 EHVYLMNVNN-GTGIMQYTPGDVDNLFSFSNNLHDV 335
>AT5G10940.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:3448890-3454127 REVERSE LENGTH=757
Length = 757
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/338 (77%), Positives = 293/338 (86%), Gaps = 2/338 (0%)
Query: 1 MDSVPFRDGNIHKLLQTRYLNTRLDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNS 60
MD++ F DGNI LL TR + +V+ +Q HSSL+RRLSQ++ELEGH GCVNA+AWNS
Sbjct: 1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60
Query: 61 TGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVR 120
GS+LISGSDD RINIW+YSS+KLLHSIDTGH+ANIFCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61 NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120
Query: 121 LFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFREG 180
LFN SRLSGR D AI P ALYQCH+RRVKKLAVE GNPNVVWSASEDGTLRQHDFRE
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180
Query: 181 TTCPPAGSSHQECRNVLLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFA 240
T+CPPAG++HQECR+VLLDLRSGAKR+LADPPKQ L+LKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240
Query: 241 RLYDRRMLPPLSSCRQRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSG 300
RLYDRRMLPPL+S R+RM PPPCVNYFCPMHLS+RG +LHLTHVTFSP+G EVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300
Query: 301 EHVYLMNVNNA--GVNELQYTPEDVSKLMTYSPTINGV 336
EHVYLMNVNN +QYTP DV L ++S ++ V
Sbjct: 301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDV 338
>AT3G45620.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:16745918-16747993 FORWARD LENGTH=515
Length = 515
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 152/296 (51%), Gaps = 29/296 (9%)
Query: 34 SSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHS 93
S +++L +L GH GCVNAV +NSTG +L+SGSDD +I +W++ S S +GH
Sbjct: 73 SGRVKKLDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRKLSYPSGHC 132
Query: 94 ANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKL 153
N+F TKF+P T D +++ D +VRL G+ + + L + H RV KL
Sbjct: 133 ENVFQTKFIPFTDDRTIITSGADGQVRL-------GQILENGKVETKRLGRHHG-RVYKL 184
Query: 154 AVENGNPNVVWSASEDGTLRQHDFREGTTCPPAGSS--HQECRNVLLDLRSGAKRSLADP 211
AV G+PNV +S EDG ++ D R + SS Q CR R
Sbjct: 185 AVLPGDPNVFYSCGEDGFVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSR---------- 234
Query: 212 PKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRQRMSPPPCVNYFCPMH 271
+ L S I + L VGGSD +AR+YD R + CR + P VN FCP H
Sbjct: 235 ----IRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQLAPVCRHVLPDAP-VNTFCPRH 289
Query: 272 LSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNNA-GVNELQYTPEDVSKL 326
L R S+H+T + +S G E+L+SY+ E +YL N G + + +PE + ++
Sbjct: 290 L--RETNSVHITGLAYSKAG-ELLVSYNDELIYLFEKNMGYGSSPVSVSPEKLQEM 342
>AT3G45620.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:16745918-16747993 FORWARD LENGTH=481
Length = 481
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 155/306 (50%), Gaps = 29/306 (9%)
Query: 24 LDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKK 83
+ ++ + +++L +L GH GCVNAV +NSTG +L+SGSDD +I +W++ S
Sbjct: 29 ITISRRISASEGRVKKLDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGS 88
Query: 84 LLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALY 143
S +GH N+F TKF+P T D +++ D +VRL G+ + + L
Sbjct: 89 RKLSYPSGHCENVFQTKFIPFTDDRTIITSGADGQVRL-------GQILENGKVETKRLG 141
Query: 144 QCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTTCPPAGSS--HQECRNVLLDLR 201
+ H RV KLAV G+PNV +S EDG ++ D R + SS Q CR R
Sbjct: 142 RHHG-RVYKLAVLPGDPNVFYSCGEDGFVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSR 200
Query: 202 SGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRQRMSPP 261
+ L S I + L VGGSD +AR+YD R + CR +
Sbjct: 201 --------------IRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQLAPVCRHVLPDA 246
Query: 262 PCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNNA-GVNELQYTP 320
P VN FCP HL R S+H+T + +S G E+L+SY+ E +YL N G + + +P
Sbjct: 247 P-VNTFCPRHL--RETNSVHITGLAYSKAG-ELLVSYNDELIYLFEKNMGYGSSPVSVSP 302
Query: 321 EDVSKL 326
E + ++
Sbjct: 303 EKLQEM 308
>AT4G38480.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:18003957-18006002 FORWARD LENGTH=471
Length = 471
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 157/332 (47%), Gaps = 50/332 (15%)
Query: 14 LLQTRYLNTRLDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTR 73
LL R + R + L+RRL D++L+ H GCVN V++N+ G +L+SGSDD +
Sbjct: 25 LLPNRSFSNRFSASE------DLLRRLGLDKKLDKHKGCVNTVSFNADGDILLSGSDDRQ 78
Query: 74 INIWSYSSKKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFS 133
+ +W + + + S D+GH NIF KF+P + D +V+ A D +VR + SG+
Sbjct: 79 VILWDWQTASVKLSFDSGHFNNIFQAKFMPFSDDRTIVTSAADKQVRYSKILE-SGQ--- 134
Query: 134 DEAIAPFALYQCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTTCPPAGSSHQEC 193
+L H V KLAVE G+P ++ EDG ++ D R ++ C
Sbjct: 135 ----VETSLLGKHQGPVHKLAVEPGSPFSFYTCGEDGAVKHFDLRT-----RVATNLFTC 185
Query: 194 RNVLLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSS 253
+ +L V+ L + + P LL V G D +AR+YD R S
Sbjct: 186 KEAKFNL--------------VVYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSY--RSE 229
Query: 254 CRQRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVN---- 309
+ P +++FCP HL H + +T + FS D E+L SYS E +YL +
Sbjct: 230 GWYNFTQP--IDHFCPGHLIGDDH--VGITGLAFS-DQSELLASYSDEFIYLFTPDMGLG 284
Query: 310 -----NAGVNELQYTPEDVSKLMTYSPTINGV 336
++ E + TP+ V K T T+ GV
Sbjct: 285 PTPYPSSTKTEERMTPQ-VYKEHTNRETVKGV 315
>AT4G35140.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:16723873-16726477 REVERSE LENGTH=496
Length = 496
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 141/276 (51%), Gaps = 38/276 (13%)
Query: 35 SLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSA 94
+L+ RL ++LE H GCVN V++N+ G +LISGSDD R+ +W + + S +GH+
Sbjct: 44 NLVLRLEIYKKLEKHKGCVNTVSFNAEGDVLISGSDDRRVVLWDWQLGNVKLSFHSGHAN 103
Query: 95 NIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKLA 154
N+F KF+P + D +V+ A D VR S L G D+ F H R KL
Sbjct: 104 NVFQAKFMPFSDDRTIVTCAADGMVR--RASILEG----DKVETSF--LGLHQGRAHKLC 155
Query: 155 VENGNPNVVWSASEDGTLRQHDFREGTTCPPAGSSHQECRNVLLDLRSGAKRSLADPPKQ 214
+E GNP++ ++ EDG +++ D R T P + CR+V DP ++
Sbjct: 156 IEPGNPHIFYTCGEDGLVQRFDLR--TEAP---TELFTCRSV-------------DPRRR 197
Query: 215 ---VLALKSCDISSTRPHLLLVGGSDAFARLYD-RRMLPPLSSCRQRMSPPPCVNYFCPM 270
+ L + I +L VGG + +ARLYD RR + R + ++FCP
Sbjct: 198 NMDAIQLNAIAIDPRNSNLFAVGGMEEYARLYDIRRFQGEGLNGFTRAA-----DHFCPP 252
Query: 271 HLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLM 306
HL G+ + +T + FS + E+L+SY+ E +YL
Sbjct: 253 HLI--GNEDVGITGLAFS-EQSELLVSYNDEFIYLF 285
>AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:1207759-1209066 FORWARD LENGTH=333
Length = 333
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Query: 32 THSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTG 91
T+ SLI R EGH ++ +AW+S S SDD + IW S + G
Sbjct: 73 TNYSLIHRY------EGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRG 126
Query: 92 HSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHSRRVK 151
H+ +FC F P + L+VSG+ D +R++ + +G+ + + HS +
Sbjct: 127 HTNFVFCVNFNPPS--NLIVSGSFDETIRIWEVK--TGK--------CVRMIKAHSMPIS 174
Query: 152 KLAVENGNPNVVWSASEDGTLRQHDFREGTTCPPAGSSHQECRNVLLDLRSGA 204
+ N + +++ SAS DG+ + D +EGT C L+D +S A
Sbjct: 175 SVHF-NRDGSLIVSASHDGSCKIWDAKEGT-----------CLKTLIDDKSPA 215
>AT2G47410.2 | Symbols: | WD40/YVTN repeat-like-containing
domain;Bromodomain | chr2:19449133-19456991 FORWARD
LENGTH=1519
Length = 1519
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 24 LDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKK 83
L H + S++++++ ++L GH V ++ +G +I+GSDD + IWS +
Sbjct: 209 LSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAL 268
Query: 84 LLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALY 143
L S GH +I T +++ LV S + D +R++ L P ++
Sbjct: 269 CLASC-RGHEGDI--TDLAVSSNNALVASASNDFVIRVWRLP----------DGMPISVL 315
Query: 144 QCHSRRVKKLAVENGNPNV--VWSASEDGTLRQHDFREGTTCP 184
+ H+ V +A +V + S+S+DGT R D R P
Sbjct: 316 RGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLP 358
>AT2G47410.1 | Symbols: | WD40/YVTN repeat-like-containing
domain;Bromodomain | chr2:19449133-19456991 FORWARD
LENGTH=1520
Length = 1520
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 24 LDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKK 83
L H + S++++++ ++L GH V ++ +G +I+GSDD + IWS +
Sbjct: 210 LSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAL 269
Query: 84 LLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALY 143
L S GH +I T +++ LV S + D +R++ L P ++
Sbjct: 270 CLASC-RGHEGDI--TDLAVSSNNALVASASNDFVIRVWRLP----------DGMPISVL 316
Query: 144 QCHSRRVKKLAVENGNPNV--VWSASEDGTLRQHDFREGTTCP 184
+ H+ V +A +V + S+S+DGT R D R P
Sbjct: 317 RGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLP 359
>AT5G49430.1 | Symbols: | WD40/YVTN repeat-like-containing
domain;Bromodomain | chr5:20037338-20045454 REVERSE
LENGTH=1677
Length = 1677
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 40/227 (17%)
Query: 28 HTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHS 87
+ + SS+++++ + L GH V + +G +I+GSDD + +WS + L S
Sbjct: 223 YVIAKPSSMVQKMQNIKRLRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLAS 282
Query: 88 IDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHS 147
GH +I T +++ + S + D +R++ L G P ++ + H+
Sbjct: 283 C-RGHEGDI--TDLAVSSNNIFIASASNDCVIRVWRLP----DGL------PVSVLRGHT 329
Query: 148 RRVKKLAV--ENGNPNVVWSASEDGTLRQHDFREGTTCP---------PAGSSHQECRNV 196
V +A G+P + S+S+DGT R D R P P G +
Sbjct: 330 GAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVPRPPSPDGKN------- 382
Query: 197 LLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLY 243
SG S A Q+ C + + + G SD AR+Y
Sbjct: 383 -----SGPSSSNAQQSHQIF----CCAFNASGSVFVTGSSDTLARVY 420
>AT2G21390.1 | Symbols: | Coatomer, alpha subunit |
chr2:9152428-9156577 FORWARD LENGTH=1218
Length = 1218
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 46 LEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPET 105
L GHL + V ++ ++S SDD I IW++ S+ + S+ TGH+ + C F P+
Sbjct: 89 LLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCI-SVLTGHNHYVMCASFHPK- 146
Query: 106 SDELVVSGAGDAEVRLFNLSRLSGRGFS 133
++LVVS + D VR++++ L + S
Sbjct: 147 -EDLVVSASLDQTVRVWDIGALKKKSAS 173
>AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchless
protein, putative | chr5:21401423-21404203 FORWARD
LENGTH=473
Length = 473
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 46 LEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPET 105
GH+G V V+W++ +L+SGS D+ + IW +KKL + GH+ +F + P+
Sbjct: 398 FRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDL-PGHADEVFAVDWSPD- 455
Query: 106 SDELVVSGAGDAEVRLFN 123
E VVSG D ++L+
Sbjct: 456 -GEKVVSGGKDRVLKLWK 472
>AT1G62020.1 | Symbols: | Coatomer, alpha subunit |
chr1:22919814-22923728 FORWARD LENGTH=1216
Length = 1216
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 46 LEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPET 105
L GHL + V ++ ++S SDD I IW++ S+ + S+ TGH+ + C F P+
Sbjct: 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCV-SVLTGHNHYVMCASFHPK- 146
Query: 106 SDELVVSGAGDAEVRLFNLSRLSGRGFS 133
++LVVS + D VR++++ L + S
Sbjct: 147 -EDLVVSASLDQTVRVWDIGALRKKTVS 173
>AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 |
Transducin/WD40 repeat-like superfamily protein |
chr2:13978000-13983282 FORWARD LENGTH=675
Length = 675
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 63 SMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLF 122
SML+SGSDD ++ +W + + +ID ANI C K+ P +S+ + V G+ D + +
Sbjct: 477 SMLVSGSDDCKVKVWCTRQEASVINIDM--KANICCVKYNPGSSNYIAV-GSADHHIHYY 533
Query: 123 NLSRLSGRGFSDEAIAPFALYQCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 179
+L +S P ++ H + V + + N + SAS D TLR D ++
Sbjct: 534 DLRNIS---------QPLHVFSGHKKAVSYVKFLSNNE--LASASTDSTLRLWDVKD 579
>AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:18413690-18415223 FORWARD LENGTH=317
Length = 317
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 44 RELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVP 103
+E GH ++ VA++S ++S SDD + +W + L+ ++ GH+ FC F P
Sbjct: 65 QEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTL-IGHTNYAFCVNFNP 123
Query: 104 ETSDELVVSGAGDAEVRLFNLS 125
+++ ++VSG+ D VR+++++
Sbjct: 124 QSN--MIVSGSFDETVRIWDVT 143
>AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1179
Length = 1179
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 23/143 (16%)
Query: 48 GHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPETSD 107
GH V++VA++S ++++G+ I +W K++ + TGH +N +F P
Sbjct: 56 GHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAF-TGHRSNCSAVEFHP--FG 112
Query: 108 ELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKL--------AVENGN 159
E + SG+ DA ++++++ + +G Y+ HSR + + V G
Sbjct: 113 EFLASGSSDANLKIWDIRK---KGC-------IQTYKGHSRGISTIRFTPDGRWVVSGGL 162
Query: 160 PNV--VWSASEDGTLRQHDFREG 180
NV VW + L + F EG
Sbjct: 163 DNVVKVWDLTAGKLLHEFKFHEG 185
>AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1181
Length = 1181
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 23/143 (16%)
Query: 48 GHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPETSD 107
GH V++VA++S ++++G+ I +W K++ + TGH +N +F P
Sbjct: 56 GHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAF-TGHRSNCSAVEFHP--FG 112
Query: 108 ELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKL--------AVENGN 159
E + SG+ DA ++++++ + +G Y+ HSR + + V G
Sbjct: 113 EFLASGSSDANLKIWDIRK---KGC-------IQTYKGHSRGISTIRFTPDGRWVVSGGL 162
Query: 160 PNV--VWSASEDGTLRQHDFREG 180
NV VW + L + F EG
Sbjct: 163 DNVVKVWDLTAGKLLHEFKFHEG 185
>AT5G56130.1 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40
repeat-like superfamily protein | chr5:22722755-22725065
REVERSE LENGTH=315
Length = 315
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 44 RELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSID---TGHSANIFCTK 100
RE +GH V++VAWNS G+ L SGS D IW+ + D GH+ ++
Sbjct: 14 REYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLC 73
Query: 101 FVPETSDELVVSGAGDAEVRLFN 123
+ P+ SD LV + +GD VRL++
Sbjct: 74 WDPKHSD-LVATASGDKSVRLWD 95
>AT1G79990.5 | Symbols: | structural molecules |
chr1:30085910-30091949 FORWARD LENGTH=912
Length = 912
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 46 LEGHLGCVNAVAWNSTGS--MLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVP 103
L+ HL VN V + + G LI+GSDD +W Y +K + +++ GH+ N+ F P
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVSFHP 239
Query: 104 ETSDELVVSGAGDAEVRLFN 123
E ++++G+ D VR+++
Sbjct: 240 ELP--IIITGSEDGTVRIWH 257
>AT1G79990.3 | Symbols: | structural molecules |
chr1:30085910-30091949 FORWARD LENGTH=920
Length = 920
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 46 LEGHLGCVNAVAWNSTGS--MLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVP 103
L+ HL VN V + + G LI+GSDD +W Y +K + +++ GH+ N+ F P
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVSFHP 239
Query: 104 ETSDELVVSGAGDAEVRLF 122
E ++++G+ D VR++
Sbjct: 240 ELP--IIITGSEDGTVRIW 256