Miyakogusa Predicted Gene

Lj1g3v1560080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1560080.1 Non Chatacterized Hit- tr|D7KY94|D7KY94_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,39.02,2e-18,
,TC72047.path1.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524...    97   4e-21
AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524...    97   4e-21
AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005...    67   6e-12
AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836...    64   3e-11
AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550...    64   4e-11

>AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
           REVERSE LENGTH=678
          Length = 678

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 33  DRLCFVTINLSPVSLRQNSSAL-LFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVK 91
           +R+      LS  + RQ+  +L L   L   + PV SRCN  +CRS L+P  G E P++K
Sbjct: 33  NRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPGNGNEGPILK 92

Query: 92  AATISLSRSYNAI-SRPILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSS 150
           +  +  +R Y+A+   P L++LIPA+GI+ FA +GL P LRL+R    +   D + +KSS
Sbjct: 93  STAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSS 152

Query: 151 SRYIM 155
           ++YI+
Sbjct: 153 TQYIV 157


>AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
           REVERSE LENGTH=678
          Length = 678

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 33  DRLCFVTINLSPVSLRQNSSAL-LFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVK 91
           +R+      LS  + RQ+  +L L   L   + PV SRCN  +CRS L+P  G E P++K
Sbjct: 33  NRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPGNGNEGPILK 92

Query: 92  AATISLSRSYNAI-SRPILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSS 150
           +  +  +R Y+A+   P L++LIPA+GI+ FA +GL P LRL+R    +   D + +KSS
Sbjct: 93  STAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSS 152

Query: 151 SRYIM 155
           ++YI+
Sbjct: 153 TQYIV 157


>AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005
           REVERSE LENGTH=673
          Length = 673

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 1   MAYLGSMGLSHGVRLLYTSDRKCSFC--QRPLPGDRLCFVTINLS---PVSLRQNSSALL 55
           MA  G++ LSH + L     R   FC  +      RL      LS   P+     S+ LL
Sbjct: 1   MALYGTLQLSHSLGLC----RNQRFCNPENSAMRRRLHISNGPLSLGVPLGQHGFSNILL 56

Query: 56  FSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNAISR-PILLQLIP 114
            + L  P+  VP R     C S  + +G    P VKA T+ L++S+  + + P + +L+P
Sbjct: 57  SNYLRRPICSVPCRTTAFRCHS-FSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYKLVP 115

Query: 115 ALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIM 155
           A+ ++ F+ +GL PF R  R + L ++ D  WKKS + ++M
Sbjct: 116 AVALLVFSLWGLVPFARQGRNILL-NKNDNGWKKSGTYHVM 155


>AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836
           REVERSE LENGTH=645
          Length = 645

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 44  PVSLRQNSSALLFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNA 103
           P+     S+ LL + L  P+  VP R     C S  + +G    P VKA T+ L++S+  
Sbjct: 17  PLGQHGFSNILLSNYLRRPICSVPCRTTAFRCHS-FSASGKAIEPAVKAVTVVLTKSHGL 75

Query: 104 ISR-PILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIM 155
           + + P + +L+PA+ ++ F+ +GL PF R  R + L ++ D  WKKS + ++M
Sbjct: 76  MQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILL-NKNDNGWKKSGTYHVM 127


>AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550
           REVERSE LENGTH=671
          Length = 671

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 44  PVSLRQNSSALLFSGLHAPLKPVPSRCNVLLCRSVLTPAGGFEAPLVKAATISLSRSYNA 103
           P+     S+ LL + L  P+  VP R     C S  + +G    P VKA T+ L++S+  
Sbjct: 43  PLGQHGFSNILLSNYLRRPICSVPCRTTAFRCHS-FSASGKAIEPAVKAVTVVLTKSHGL 101

Query: 104 ISR-PILLQLIPALGIIGFAFFGLEPFLRLSRVLFLQDRVDRSWKKSSSRYIM 155
           + + P + +L+PA+ ++ F+ +GL PF R  R + L ++ D  WKKS + ++M
Sbjct: 102 MQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILL-NKNDNGWKKSGTYHVM 153