Miyakogusa Predicted Gene

Lj1g3v1560060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1560060.1 tr|G7J535|G7J535_MEDTR MscS family inner membrane
protein ynaI OS=Medicago truncatula GN=MTR_3g10028,83.4,0,seg,NULL;
Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
MS_channel,Mechanosensitive ion channel M,CUFF.27580.1
         (468 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836...   471   e-133
AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005...   471   e-133
AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550...   470   e-132
AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524...   449   e-126
AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-215524...   449   e-126

>AT5G10490.2 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836
           REVERSE LENGTH=645
          Length = 645

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/458 (56%), Positives = 311/458 (67%), Gaps = 32/458 (6%)

Query: 1   MGLDFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSIM 60
           MG  FAGK            LFMELLGFSTQKW               REI TNFLSS+M
Sbjct: 204 MGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVM 263

Query: 61  IHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNL 120
           IHATRPF+LNEWIQTKIEGYEVSGTVEHVGWWSPTI+RG+DREA+HIPNHKFTVNVVRNL
Sbjct: 264 IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNL 323

Query: 121 SQKTHWRIKSYIAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSL 180
           +QKTHWRIK+++AISHLDVNKIN IVADMRKVLAKNP VEQQRLHRRVFLENV PENQ+L
Sbjct: 324 TQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQAL 383

Query: 181 MILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYREAESENIPFG 240
            ILISCFVKTSH EEYL VKEAILLDLLRV+SHHRARLATPIRT++K+Y E + EN PFG
Sbjct: 384 SILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFG 443

Query: 241 DTIFSRSRAAVNRPFLLIEPQYKVNGEDKVKPSTRSTSGNEEKDAKLDEIVVSDSNGDDN 300
           ++++    +   RP +LIEP YK+NGEDK K   R+     E++           N   N
Sbjct: 444 ESMYGGVTS--RRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQE-----------NKGSN 490

Query: 301 LAATSTSPPGVNSKDKSKSISGVPNQNMGSDSSVEKTSKTMQPKKESAGDVRKGSAVPAS 360
             +  TS P + +           N  +G +S V  T+K   P++  A  V K  + P +
Sbjct: 491 PKSKETSSPDLKA-----------NVKVG-ESPVSDTNKV--PEETVAKPVIKAVSKPPT 536

Query: 361 KNLSQSAVPEISPVTSHESGTASQSKQDGEKSSVTSSPVRSPLEENILLEVALEGSKRTL 420
              ++++  E  P      GT   +K D E  S TSS  RS LEENI+L VALEGSKRTL
Sbjct: 537 PKDTETSGTE-KPKAKRSGGTIKSTKTD-ETDSSTSSASRSTLEENIVLGVALEGSKRTL 594

Query: 421 PIEEEMTSSPTPAESQEFAVQR--NGSGP-PSNKDKKD 455
           PIEEE+ S P   +++E    R   G+GP  ++K++KD
Sbjct: 595 PIEEEIHSPPMETDAKELTGARRSGGNGPLVADKEQKD 632


>AT5G10490.1 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005
           REVERSE LENGTH=673
          Length = 673

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/458 (56%), Positives = 311/458 (67%), Gaps = 32/458 (6%)

Query: 1   MGLDFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSIM 60
           MG  FAGK            LFMELLGFSTQKW               REI TNFLSS+M
Sbjct: 232 MGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVM 291

Query: 61  IHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNL 120
           IHATRPF+LNEWIQTKIEGYEVSGTVEHVGWWSPTI+RG+DREA+HIPNHKFTVNVVRNL
Sbjct: 292 IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNL 351

Query: 121 SQKTHWRIKSYIAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSL 180
           +QKTHWRIK+++AISHLDVNKIN IVADMRKVLAKNP VEQQRLHRRVFLENV PENQ+L
Sbjct: 352 TQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQAL 411

Query: 181 MILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYREAESENIPFG 240
            ILISCFVKTSH EEYL VKEAILLDLLRV+SHHRARLATPIRT++K+Y E + EN PFG
Sbjct: 412 SILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFG 471

Query: 241 DTIFSRSRAAVNRPFLLIEPQYKVNGEDKVKPSTRSTSGNEEKDAKLDEIVVSDSNGDDN 300
           ++++    +   RP +LIEP YK+NGEDK K   R+     E++           N   N
Sbjct: 472 ESMYGGVTS--RRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQE-----------NKGSN 518

Query: 301 LAATSTSPPGVNSKDKSKSISGVPNQNMGSDSSVEKTSKTMQPKKESAGDVRKGSAVPAS 360
             +  TS P + +           N  +G +S V  T+K   P++  A  V K  + P +
Sbjct: 519 PKSKETSSPDLKA-----------NVKVG-ESPVSDTNKV--PEETVAKPVIKAVSKPPT 564

Query: 361 KNLSQSAVPEISPVTSHESGTASQSKQDGEKSSVTSSPVRSPLEENILLEVALEGSKRTL 420
              ++++  E  P      GT   +K D E  S TSS  RS LEENI+L VALEGSKRTL
Sbjct: 565 PKDTETSGTE-KPKAKRSGGTIKSTKTD-ETDSSTSSASRSTLEENIVLGVALEGSKRTL 622

Query: 421 PIEEEMTSSPTPAESQEFAVQR--NGSGP-PSNKDKKD 455
           PIEEE+ S P   +++E    R   G+GP  ++K++KD
Sbjct: 623 PIEEEIHSPPMETDAKELTGARRSGGNGPLVADKEQKD 660


>AT5G10490.3 | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304550
           REVERSE LENGTH=671
          Length = 671

 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/458 (56%), Positives = 309/458 (67%), Gaps = 32/458 (6%)

Query: 1   MGLDFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSIM 60
           MG  FAGK            LFMELLGFSTQKW               REI TNFLSS+M
Sbjct: 230 MGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVM 289

Query: 61  IHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNL 120
           IHATRPF+LNEWIQTKIEGYEVSGTVEHVGWWSPTI+RG+DREA+HIPNHKFTVNVVRNL
Sbjct: 290 IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNL 349

Query: 121 SQKTHWRIKSYIAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSL 180
           +QKTHWRIK+++AISHLDVNKIN IVADMRKVLAKNP VEQQRLHRRVFLENV PENQ+L
Sbjct: 350 TQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQAL 409

Query: 181 MILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYREAESENIPFG 240
            ILISCFVKTSH EEYL VKEAILLDLLRV+SHHRARLATPIRT++K+Y E + EN PFG
Sbjct: 410 SILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFG 469

Query: 241 DTIFSRSRAAVNRPFLLIEPQYKVNGEDKVKPSTRSTSGNEEKDAKLDEIVVSDSNGDDN 300
           ++++    +   RP +LIEP YK+NGEDK K   R+     E++           N   N
Sbjct: 470 ESMYGGVTS--RRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQE-----------NKGSN 516

Query: 301 LAATSTSPPGVNSKDKSKSISGVPNQNMGSDSSVEKTSKTMQPKKESAGDVRKGSAVPAS 360
             +  TS P + +  K              +S V  T+K   P++  A  V K  + P +
Sbjct: 517 PKSKETSSPDLKANVKV------------GESPVSDTNKV--PEETVAKPVIKAVSKPPT 562

Query: 361 KNLSQSAVPEISPVTSHESGTASQSKQDGEKSSVTSSPVRSPLEENILLEVALEGSKRTL 420
              ++++  E  P      GT   +K D E  S TSS  RS LEENI+L VALEGSKRTL
Sbjct: 563 PKDTETSGTE-KPKAKRSGGTIKSTKTD-ETDSSTSSASRSTLEENIVLGVALEGSKRTL 620

Query: 421 PIEEEMTSSPTPAESQEFAVQR--NGSGP-PSNKDKKD 455
           PIEEE+ S P   +++E    R   G+GP  ++K++KD
Sbjct: 621 PIEEEIHSPPMETDAKELTGARRSGGNGPLVADKEQKD 658


>AT1G58200.2 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
           REVERSE LENGTH=678
          Length = 678

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/461 (52%), Positives = 307/461 (66%), Gaps = 40/461 (8%)

Query: 1   MGLDFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSIM 60
           MG  FAGK            LFMELLGFSTQKW               REI TNFLSSIM
Sbjct: 234 MGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIM 293

Query: 61  IHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNL 120
           IHATRPF+LNEWIQTKI GYEVSGTVE VGWWSPTI+RGDDREAVHIPNH+F+VN+VRNL
Sbjct: 294 IHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNL 353

Query: 121 SQKTHWRIKSYIAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSL 180
           +QKTHWRIK+++AISHLDV+KIN IVADMRKVL+KNPQ+EQQ++HRRVFLE+++PENQ+L
Sbjct: 354 TQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQAL 413

Query: 181 MILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYREAESENIPFG 240
            ILISCFVKTS FEEYLCVKEA+LLDLL V+ HH ARLATPIRTVQ++  EAE +   F 
Sbjct: 414 RILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFS 473

Query: 241 DTIFSRSRAAVNRPFLLIEPQYKVNGEDKVK-----PSTRSTS---GNEEKDAKLDEIVV 292
           D +F  ++AA+NR ++LIEP YK+N +D  K     P  +S S    +EE+D + +E   
Sbjct: 474 DIVF--NQAAMNRRYMLIEPSYKINSDDNSKSPSPSPGQKSPSPGQKSEERDLQ-EEPSE 530

Query: 293 SDSNGDDNLAATSTSPPGVNSKDKSKSISGVPNQNMGSDSSVEKTS------KTMQPKKE 346
           + +  ++N      S P  N+K +++  +   N N G+  S   TS      K+ + KKE
Sbjct: 531 TKAETENN-----GSVPVSNAKKENQKAALGSNSNTGTKGSSTSTSDQPVAQKSEEKKKE 585

Query: 347 SAGDVRKGSAVPASKNLSQSAVPEISPVTSHESGTASQSKQDGEKSSVTS-------SPV 399
           S GD  K      S + +           + E    S++KQ  EK++  S       S  
Sbjct: 586 SVGDPHKAEKDEVSDDEA-----------TIEQTLKSKAKQGSEKNNGESKARDGGGSGT 634

Query: 400 RSPLEENILLEVALEGSKRTLPIEEEMTSSPTPAESQEFAV 440
            S LEEN++L VAL+GSKRTLPI+EE  +S    +S+E  +
Sbjct: 635 SSLLEENLVLGVALDGSKRTLPIDEEHKASGALMDSEELGI 675


>AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488
           REVERSE LENGTH=678
          Length = 678

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/461 (52%), Positives = 307/461 (66%), Gaps = 40/461 (8%)

Query: 1   MGLDFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSIM 60
           MG  FAGK            LFMELLGFSTQKW               REI TNFLSSIM
Sbjct: 234 MGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIM 293

Query: 61  IHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNL 120
           IHATRPF+LNEWIQTKI GYEVSGTVE VGWWSPTI+RGDDREAVHIPNH+F+VN+VRNL
Sbjct: 294 IHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNL 353

Query: 121 SQKTHWRIKSYIAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSL 180
           +QKTHWRIK+++AISHLDV+KIN IVADMRKVL+KNPQ+EQQ++HRRVFLE+++PENQ+L
Sbjct: 354 TQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQAL 413

Query: 181 MILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYREAESENIPFG 240
            ILISCFVKTS FEEYLCVKEA+LLDLL V+ HH ARLATPIRTVQ++  EAE +   F 
Sbjct: 414 RILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFS 473

Query: 241 DTIFSRSRAAVNRPFLLIEPQYKVNGEDKVK-----PSTRSTS---GNEEKDAKLDEIVV 292
           D +F  ++AA+NR ++LIEP YK+N +D  K     P  +S S    +EE+D + +E   
Sbjct: 474 DIVF--NQAAMNRRYMLIEPSYKINSDDNSKSPSPSPGQKSPSPGQKSEERDLQ-EEPSE 530

Query: 293 SDSNGDDNLAATSTSPPGVNSKDKSKSISGVPNQNMGSDSSVEKTS------KTMQPKKE 346
           + +  ++N      S P  N+K +++  +   N N G+  S   TS      K+ + KKE
Sbjct: 531 TKAETENN-----GSVPVSNAKKENQKAALGSNSNTGTKGSSTSTSDQPVAQKSEEKKKE 585

Query: 347 SAGDVRKGSAVPASKNLSQSAVPEISPVTSHESGTASQSKQDGEKSSVTS-------SPV 399
           S GD  K      S + +           + E    S++KQ  EK++  S       S  
Sbjct: 586 SVGDPHKAEKDEVSDDEA-----------TIEQTLKSKAKQGSEKNNGESKARDGGGSGT 634

Query: 400 RSPLEENILLEVALEGSKRTLPIEEEMTSSPTPAESQEFAV 440
            S LEEN++L VAL+GSKRTLPI+EE  +S    +S+E  +
Sbjct: 635 SSLLEENLVLGVALDGSKRTLPIDEEHKASGALMDSEELGI 675