Miyakogusa Predicted Gene

Lj1g3v1548920.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1548920.1 CUFF.27499.1
         (582 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09710.1 | Symbols:  | Homeodomain-like superfamily protein |...   221   1e-57
AT1G09710.2 | Symbols:  | Homeodomain-like superfamily protein |...   220   2e-57
AT1G58220.1 | Symbols:  | Homeodomain-like superfamily protein |...   211   9e-55

>AT1G09710.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:3141119-3144232 FORWARD LENGTH=610
          Length = 610

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/276 (47%), Positives = 173/276 (62%), Gaps = 15/276 (5%)

Query: 13  FSEEDAATLTERYDTTTVLTLLQEIANYPHTKIDWNELVKKTSTGISNAREYQMLWRHLA 72
            +E D ATL  RYD  T+L +LQEI+    TK+DWN LVKKT+TGI+NAREYQ+LWRHL+
Sbjct: 16  ITEGDIATLLLRYDMETILRMLQEISYCSETKMDWNALVKKTTTGITNAREYQLLWRHLS 75

Query: 73  YRDALPEKFEDGAQPXXXXXXXXXXXXXXPPVSEESALEAAACVKVMVASCTFSES-TPT 131
           YR  L    ED A P              P VS E+++EA A VKVM AS   SES    
Sbjct: 76  YRHPL-LPVEDDALPLDDDSDMECELEASPAVSHEASVEAIAHVKVMAASYVLSESDILD 134

Query: 132 SSTIEAPLTIHVPVC--HSSRTPNETSQPSNLMERTTMTFPVTVPRQTLPTISSTDGIET 189
            ST+EAPLTI++P      S+ P+E+   S  M    + FPV      L  ++ST+G+  
Sbjct: 135 DSTVEAPLTINIPYALPEGSQEPSESPWSSRGMN---INFPV-----CLQKVTSTEGMNG 186

Query: 190 KGNIGGNLASKRKRKQWSEEEDMQLRAAVQRFGEGNWATMAKGDNFPIKRSATQLAQRWS 249
            G+ G ++A +RKRK+WS EED +L AAV+R GEGNWA + KGD F  +R+A+QL+QRW+
Sbjct: 187 NGSAGISMAFRRKRKRWSAEEDEELFAAVKRCGEGNWAHIVKGD-FRGERTASQLSQRWA 245

Query: 250 TLRKKDCSANSGTNLPNPQYTTAEQLATRHSLSLAL 285
            +RK+ C  ++  +    Q T A +LA  H+LSLAL
Sbjct: 246 LIRKR-CHTSTSVSQCGLQGTEA-KLAVNHALSLAL 279


>AT1G09710.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:3141119-3144232 FORWARD LENGTH=650
          Length = 650

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/276 (47%), Positives = 173/276 (62%), Gaps = 15/276 (5%)

Query: 13  FSEEDAATLTERYDTTTVLTLLQEIANYPHTKIDWNELVKKTSTGISNAREYQMLWRHLA 72
            +E D ATL  RYD  T+L +LQEI+    TK+DWN LVKKT+TGI+NAREYQ+LWRHL+
Sbjct: 16  ITEGDIATLLLRYDMETILRMLQEISYCSETKMDWNALVKKTTTGITNAREYQLLWRHLS 75

Query: 73  YRDALPEKFEDGAQPXXXXXXXXXXXXXXPPVSEESALEAAACVKVMVASCTFSES-TPT 131
           YR  L    ED A P              P VS E+++EA A VKVM AS   SES    
Sbjct: 76  YRHPL-LPVEDDALPLDDDSDMECELEASPAVSHEASVEAIAHVKVMAASYVLSESDILD 134

Query: 132 SSTIEAPLTIHVPVC--HSSRTPNETSQPSNLMERTTMTFPVTVPRQTLPTISSTDGIET 189
            ST+EAPLTI++P      S+ P+E+   S  M    + FPV      L  ++ST+G+  
Sbjct: 135 DSTVEAPLTINIPYALPEGSQEPSESPWSSRGMN---INFPV-----CLQKVTSTEGMNG 186

Query: 190 KGNIGGNLASKRKRKQWSEEEDMQLRAAVQRFGEGNWATMAKGDNFPIKRSATQLAQRWS 249
            G+ G ++A +RKRK+WS EED +L AAV+R GEGNWA + KGD F  +R+A+QL+QRW+
Sbjct: 187 NGSAGISMAFRRKRKRWSAEEDEELFAAVKRCGEGNWAHIVKGD-FRGERTASQLSQRWA 245

Query: 250 TLRKKDCSANSGTNLPNPQYTTAEQLATRHSLSLAL 285
            +RK+ C  ++  +    Q T A +LA  H+LSLAL
Sbjct: 246 LIRKR-CHTSTSVSQCGLQGTEA-KLAVNHALSLAL 279


>AT1G58220.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:21558388-21562669 REVERSE LENGTH=834
          Length = 834

 Score =  211 bits (538), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/309 (44%), Positives = 187/309 (60%), Gaps = 20/309 (6%)

Query: 4   SGTKCNKLSFSEEDAATLTERYDTTTVLTLLQEIANYPHTKIDWNELVKKTSTGISNARE 63
           S  K  K   SE D ATL +RYDT T+L LLQE+A Y   K++WNELVKKTSTGI++ARE
Sbjct: 5   SNNKKRKEFISEADIATLLQRYDTVTILKLLQEMAYYAEAKMNWNELVKKTSTGITSARE 64

Query: 64  YQMLWRHLAYRDALPEKFEDGAQPXXXXXXXXXXXXXXPPVSEESALEAAACVKVMVASC 123
           YQ+LWRHLAYRD+L     + A+               P VS +   EA A VKVM AS 
Sbjct: 65  YQLLWRHLAYRDSL-VPVGNNARVLDDDSDMECELEASPGVSVDVVTEAVAHVKVMAASY 123

Query: 124 TFSES-TPTSSTIEAPLTIHVPV-CHSSRTPNETSQPSNLMERTTMTFPVTVPRQTLPTI 181
             SES  P  ST+EAPLTI++P   H  R P E S          +TFPV +P+      
Sbjct: 124 VPSESDIPEDSTVEAPLTINIPYSLH--RGPQEPSDSYWSSRGMNITFPVFLPK------ 175

Query: 182 SSTDGIETKGNIGGNLASKRKRKQWSEEEDMQLRAAVQRFGEGNWATMAKGDNFPIKRSA 241
            + +G    G +  +LA +++RK+WS EED +L AAV+R GEG+WA ++K + F  +R+A
Sbjct: 176 -AAEGHNGNG-LASSLAPRKRRKKWSAEEDEELIAAVKRHGEGSWALISK-EEFEGERTA 232

Query: 242 TQLAQRWSTLRKKDCSANSGTNLPNPQYTTAEQLATRHSLSLALD--MPFKKLTTPGISA 299
           +QL+QRW  +R++  ++N+ T     Q T A Q+A   +LSLA+   +P KKL   G++ 
Sbjct: 233 SQLSQRWGAIRRRTDTSNTSTQT-GLQRTEA-QMAANRALSLAVGNRLPSKKLAV-GMT- 288

Query: 300 PVRTSASIK 308
           P+ +S +IK
Sbjct: 289 PMLSSGTIK 297