Miyakogusa Predicted Gene
- Lj1g3v1548800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1548800.1 CUFF.27496.1
(404 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like su... 266 2e-71
AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993... 102 3e-22
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993... 102 3e-22
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:164... 98 1e-20
AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:121... 92 4e-19
AT3G62800.3 | Symbols: | double-stranded-RNA-binding protein 4 ... 91 2e-18
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei... 91 2e-18
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei... 91 2e-18
>AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
superfamily protein | chr1:3137960-3140118 REVERSE
LENGTH=419
Length = 419
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/190 (67%), Positives = 152/190 (80%), Gaps = 3/190 (1%)
Query: 62 GVSNCYVFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRK 121
GVSNCYVFKSRLQEYAQK L TPVYE +KEGPSH+ F+STVI++ VRY+SLPGFFNRK
Sbjct: 9 GVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRK 68
Query: 122 AAEQSAAEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETP 181
AAEQSAAEVAL ELAKS+E +Q VSQPVHETGLCKNLLQEYAQKM+YA+PLY C+K ET
Sbjct: 69 AAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETL 128
Query: 182 GRAAGYSCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSPSHATEN---QLTVIPC 238
GR ++CT++IGGI Y G +TK++AE+ A RTALLAIQS + N QLTV+PC
Sbjct: 129 GRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPC 188
Query: 239 RKRATTVPLP 248
K+ +P
Sbjct: 189 EKKTIQAAIP 198
>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
chr3:9930460-9931714 REVERSE LENGTH=359
Length = 359
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 68 VFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQSA 127
++K++LQE AQ+ + P Y +EGP H P F+++V N ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 128 AEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAGY 187
AEVAL L+ + ++ + ETG+ KNLLQE A + +P+Y + PG +
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 119
Query: 188 SCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSP 225
SCT+++ G+ + G +AKTK++AE AA A +++ P
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157
>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
chr3:9930460-9931714 REVERSE LENGTH=359
Length = 359
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 68 VFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQSA 127
++K++LQE AQ+ + P Y +EGP H P F+++V N ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 128 AEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAGY 187
AEVAL L+ + ++ + ETG+ KNLLQE A + +P+Y + PG +
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 119
Query: 188 SCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSP 225
SCT+++ G+ + G +AKTK++AE AA A +++ P
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157
>AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 |
chr5:16438547-16439916 FORWARD LENGTH=393
Length = 393
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 68 VFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQSA 127
++K++LQE AQ+ P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 128 AEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAGY 187
AEV+L L+ + ++ + ETG+ KNLLQE A + +P+Y + + G+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGS-CHFPGF 119
Query: 188 SCTIDIGGILYIGGTAKTKREAELKAARTALLAIQ 222
SCT+++ G+ + G +AKTK++AE AA A +++
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLK 154
>AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 |
chr2:12134098-12135915 REVERSE LENGTH=434
Length = 434
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 1/155 (0%)
Query: 68 VFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQSA 127
++K++LQE AQ+ P Y I+EGP H P F++TV N ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 128 AEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAGY 187
AEVAL L+ ++ ++ + ETG+ KNLLQE AQ++ +P Y + G +
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGL-GHQPVF 119
Query: 188 SCTIDIGGILYIGGTAKTKREAELKAARTALLAIQ 222
+ T+++ GI + G AK K++AE AA A +++
Sbjct: 120 TGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLK 154
>AT3G62800.3 | Symbols: | double-stranded-RNA-binding protein 4 |
chr3:23225749-23227163 REVERSE LENGTH=329
Length = 329
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 67 YVFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQS 126
+V+K +LQ YA + L PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 127 AAEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAG 186
AA++A+ L + V+ KNLLQE AQK S +P Y P A
Sbjct: 63 AAKIAVASLTPQSPEGIDVAY--------KNLLQEIAQKESSLLPFY-ATATSGPSHAPT 113
Query: 187 YSCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSPSHAT 229
++ T++ G ++ G AKTK+ AE+ AA+ A ++I++ S+ T
Sbjct: 114 FTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQT 156
>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
| chr3:23225749-23227163 REVERSE LENGTH=355
Length = 355
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 67 YVFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQS 126
+V+K +LQ YA + L PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 127 AAEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAG 186
AA++A+ L + V+ KNLLQE AQK S +P Y P A
Sbjct: 63 AAKIAVASLTPQSPEGIDVAY--------KNLLQEIAQKESSLLPFY-ATATSGPSHAPT 113
Query: 187 YSCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSPSHAT 229
++ T++ G ++ G AKTK+ AE+ AA+ A ++I++ S+ T
Sbjct: 114 FTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQT 156
>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
| chr3:23225749-23227163 REVERSE LENGTH=355
Length = 355
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 67 YVFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQS 126
+V+K +LQ YA + L PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 127 AAEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAG 186
AA++A+ L + V+ KNLLQE AQK S +P Y P A
Sbjct: 63 AAKIAVASLTPQSPEGIDVAY--------KNLLQEIAQKESSLLPFY-ATATSGPSHAPT 113
Query: 187 YSCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSPSHAT 229
++ T++ G ++ G AKTK+ AE+ AA+ A ++I++ S+ T
Sbjct: 114 FTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQT 156