Miyakogusa Predicted Gene

Lj1g3v1548780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1548780.1 Non Chatacterized Hit- tr|J3LAQ7|J3LAQ7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G1,48.65,0.000000000007,seg,NULL; TPR-like,NULL; TPR_11,NULL;
TPR_9,NULL; Tetratricopeptide repeats,Tetratricopeptide
repeat,CUFF.27502.1
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   2e-15

>AT5G65520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26189876-26190496 REVERSE
           LENGTH=206
          Length = 206

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 35  QRLFAKLRFQNRASVDAKRHFVKGAQLLAQXXXXXXXXXXXXXXXXXXXXXXXXXXIALD 94
           QR   K R ++RA++  +R  ++ ++LLA+                          IA+ 
Sbjct: 28  QRGLTKFRTKHRATLQTQRQLIQASRLLARARTTPKKSQSQSLAKTALTEADNV--IAIS 85

Query: 95  PKDAAAYLLKAMVLDLQGFRTXXXXXXXXXXXXXXXXXXXXGERGDALLKRGELKLATSQ 154
           P DAA ++++A+ LDL G  T                    GER DAL+KR E+KLA ++
Sbjct: 86  PDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRLKSLSVGERADALVKRAEMKLAVNR 145

Query: 155 RGKVDPALADLTESVKLS--PRNVKAWSLLGECY 186
           R ++D A+ DL E+V+L+      + + LLGECY
Sbjct: 146 RRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECY 179