Miyakogusa Predicted Gene

Lj1g3v1526320.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1526320.2 Non Chatacterized Hit- tr|I1NVC7|I1NVC7_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,43,4e-18,Multidrug resistance efflux transporter EmrE,NULL;
seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NA,CUFF.27480.2
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24460.2 | Symbols: CLT2 | CRT (chloroquine-resistance transp...   276   1e-74
AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance transp...   276   1e-74
AT5G19380.1 | Symbols: CLT1 | CRT (chloroquine-resistance transp...   212   2e-55
AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance transp...   211   5e-55
AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance transp...   167   1e-41

>AT4G24460.2 | Symbols: CLT2 | CRT (chloroquine-resistance
           transporter)-like transporter 2 | chr4:12642888-12645310
           FORWARD LENGTH=431
          Length = 431

 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/188 (76%), Positives = 163/188 (86%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVPM  YPFF+AQLTTFGYV +YF+ILY R RLGIVTNEM+ +PKWRF IIG
Sbjct: 108 NRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIG 167

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
           FLEALGVA+GM+AA MLPGPVIPILNQTYLVWQL+F+ L+L RR+ +NQIAGCLLVA GV
Sbjct: 168 FLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLVAVGV 227

Query: 227 VMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           V+AV+SGS     LS + F WPA+++ SAAFQAGASIIKEFVF D+  RL+ KSLDIFVV
Sbjct: 228 VVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVV 287

Query: 287 NSFGSGFQ 294
           NSFGSGFQ
Sbjct: 288 NSFGSGFQ 295


>AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance
           transporter)-like transporter 2 | chr4:12642888-12645310
           FORWARD LENGTH=431
          Length = 431

 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/188 (76%), Positives = 163/188 (86%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVPM  YPFF+AQLTTFGYV +YF+ILY R RLGIVTNEM+ +PKWRF IIG
Sbjct: 108 NRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIG 167

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
           FLEALGVA+GM+AA MLPGPVIPILNQTYLVWQL+F+ L+L RR+ +NQIAGCLLVA GV
Sbjct: 168 FLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLVAVGV 227

Query: 227 VMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           V+AV+SGS     LS + F WPA+++ SAAFQAGASIIKEFVF D+  RL+ KSLDIFVV
Sbjct: 228 VVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVV 287

Query: 287 NSFGSGFQ 294
           NSFGSGFQ
Sbjct: 288 NSFGSGFQ 295


>AT5G19380.1 | Symbols: CLT1 | CRT (chloroquine-resistance
           transporter)-like transporter 1 | chr5:6527017-6530445
           REVERSE LENGTH=447
          Length = 447

 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 139/189 (73%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLAL+P+  YPFFLAQL+TFGYVAVYFSILY RYR GIVT EML++PK  FLI+G
Sbjct: 119 NRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVG 178

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LE+L +A+GM+AA  L GP   +L+QT+LVWQ++FS + L RRY INQI GC LVA GV
Sbjct: 179 VLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYRINQILGCTLVAFGV 238

Query: 227 VMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           +++V SGS            W  LM+ S   Q   +++KE +F+DS  RLK  SLD+FVV
Sbjct: 239 IVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVV 298

Query: 287 NSFGSGFQV 295
           NS+GS FQV
Sbjct: 299 NSYGSIFQV 307


>AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance
           transporter)-like transporter 3 | chr5:3931649-3934961
           FORWARD LENGTH=452
          Length = 452

 Score =  211 bits (537), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 141/188 (75%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRV+YKLALVP+ +YPFFLAQL+TFGYVAVY++ILY RYR G VT+ ML++PK  FLI+G
Sbjct: 121 NRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLSVPKSPFLIVG 180

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LEAL  A+GM+AA  L GP   +L+QT+LVWQ+ FS + L RRYS+NQI GC LVA GV
Sbjct: 181 ILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQILGCTLVALGV 240

Query: 227 VMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           +++V SGS     L++    W  LM++S   Q   +++KE +FIDS  RLK  SLD+F+V
Sbjct: 241 IVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRLKGASLDLFIV 300

Query: 287 NSFGSGFQ 294
           NS+GS FQ
Sbjct: 301 NSYGSAFQ 308


>AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance
           transporter)-like transporter 1 | chr5:6527017-6530445
           REVERSE LENGTH=507
          Length = 507

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 115/163 (70%)

Query: 133 YVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIGFLEALGVASGMSAAVMLPGPVIPILN 192
           YVAVYFSILY RYR GIVT EML++PK  FLI+G LE+L +A+GM+AA  L GP   +L+
Sbjct: 205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query: 193 QTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGVVMAVTSGSNTGQMLSKVEFFWPALMI 252
           QT+LVWQ++FS + L RRY INQI GC LVA GV+++V SGS            W  LM+
Sbjct: 265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query: 253 VSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVVNSFGSGFQV 295
            S   Q   +++KE +F+DS  RLK  SLD+FVVNS+GS FQV
Sbjct: 325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQV 367



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 25/27 (92%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGY 133
           NRVLYKLAL+P+  YPFFLAQL+TFG+
Sbjct: 119 NRVLYKLALIPLKQYPFFLAQLSTFGF 145