Miyakogusa Predicted Gene

Lj1g3v1526270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1526270.1 tr|A9SK71|A9SK71_PHYPA Qc-SNARE, plant
SFT1-family OS=Physcomitrella patens subsp. patens GN=SFT1
PE,42.16,3e-17,no description,NULL; T_SNARE,Target SNARE coiled-coil
domain; SUBFAMILY NOT NAMED,NULL; GOLGI SNARE ,CUFF.27468.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14600.1 | Symbols:  | Target SNARE coiled-coil domain protei...   182   4e-47
AT1G29060.1 | Symbols:  | Target SNARE coiled-coil domain protei...   163   3e-41

>AT4G14600.1 | Symbols:  | Target SNARE coiled-coil domain protein |
           chr4:8376562-8378078 FORWARD LENGTH=137
          Length = 137

 Score =  182 bits (463), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 114/137 (83%), Gaps = 4/137 (2%)

Query: 1   MSFNSHR---GPSSYGDAAPFRSREGLSTRAGAASDEIQLRIDPV-GDMDDEITGLRGQV 56
           M+ N HR   G S YG AAP+RSREGLSTR  A S+EIQLRIDP+  D+DDEITGL GQV
Sbjct: 1   MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query: 57  RKLRNVAEEIGTEVKSHRDFLEVMQMTMIKAQAGVKNNLRRLNKSIVQNGSNHIVHVVVF 116
           R+L+N+A+EIG+E K  RDFL+ +QMT+I+AQAGVKNN+R+LN SI+++G+NHI+HVV+F
Sbjct: 61  RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query: 117 ALICFSIVYFWSKISRK 133
           AL+ F ++Y WSK+ ++
Sbjct: 121 ALLVFFVLYIWSKMFKR 137


>AT1G29060.1 | Symbols:  | Target SNARE coiled-coil domain protein |
           chr1:10147857-10149459 FORWARD LENGTH=134
          Length = 134

 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 111/134 (82%), Gaps = 1/134 (0%)

Query: 1   MSFNSHRGPSSYGDAAPFRSREGLSTRAGAASDEIQLRIDPV-GDMDDEITGLRGQVRKL 59
           M+ N   G S YG A P+RSREGLSTR  + S+EIQLRIDP+  D+DDEI GL GQVR+L
Sbjct: 1   MASNRGAGGSLYGGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQL 60

Query: 60  RNVAEEIGTEVKSHRDFLEVMQMTMIKAQAGVKNNLRRLNKSIVQNGSNHIVHVVVFALI 119
           +N+A+EIG+E KS RDFL+ +QMT+I+AQAGVKNN+R+LN SI+++G+NHI+HVV+FAL+
Sbjct: 61  KNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALL 120

Query: 120 CFSIVYFWSKISRK 133
            F I+Y WSK+ ++
Sbjct: 121 LFFILYMWSKMFKR 134