Miyakogusa Predicted Gene
- Lj1g3v1514800.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1514800.2 tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase
OS=Medicago truncatula GN=MTR_3g099470 PE=4
SV=1,84.66,0,TRNASYNTHSER,Serine-tRNA ligase, type1;
tRNA-synt_2b,Aminoacyl-tRNA synthetase, class II (G/ H/ P/
S,CUFF.27429.2
(513 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1... 688 0.0
AT1G11870.1 | Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase ... 688 0.0
AT1G11870.3 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1... 485 e-137
AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA l... 243 2e-64
>AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase |
chr1:4003895-4006556 FORWARD LENGTH=514
Length = 514
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/443 (72%), Positives = 367/443 (82%)
Query: 70 GGKPQWKATIDFKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERN 129
+P WKA IDFKWI+DNKEAV NIRNRNS+ANL+ VL LY++M +LQKEVER+R ERN
Sbjct: 70 AARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLREERN 129
Query: 130 AVANKMKGKIEPSERQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPI 189
VA KMKGK+EPSER+RL+EEGK LKE L+ Q AQSIPN+THPDVP+
Sbjct: 130 NVAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPV 189
Query: 190 GGEDCSTIIKMVGSAPKFSFPVKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEM 249
GGED S I + VGS +FSFP+KDHLQLGK EVSGSKF+YLKNEAVLLEM
Sbjct: 190 GGEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEM 249
Query: 250 ALLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIP 309
ALLNWTLS+VMK+G+TP+TTPEIVRSS+VEKCGFQPR DNTQ+YSI+ +DQCLIGTAEIP
Sbjct: 250 ALLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTAEIP 309
Query: 310 VGGLHMDSILADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEES 369
VGG+HMDSIL +S LPLKY+AFSHCFRTE T+GLYRVHQFSK EMFV C+PE+S
Sbjct: 310 VGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDS 369
Query: 370 EYYHQELIKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASN 429
E +HQELI+IEED+F+SLGLHFK LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASN
Sbjct: 370 ESFHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASN 429
Query: 430 CTDYQSRRLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQE 489
CTDYQSRRLGIRYRPSE GPKK K NL +FVHTLNATACAVPRM++CLLENYQQE
Sbjct: 430 CTDYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQE 489
Query: 490 DGSVLIPEPLRPFMGGLNIIARK 512
DGSV+IPEPLRPFMGG+ +I K
Sbjct: 490 DGSVVIPEPLRPFMGGIELIKPK 512
>AT1G11870.1 | Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase |
chr1:4003895-4006556 FORWARD LENGTH=512
Length = 512
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/442 (73%), Positives = 367/442 (83%)
Query: 71 GKPQWKATIDFKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERNA 130
+P WKA IDFKWI+DNKEAV NIRNRNS+ANL+ VL LY++M +LQKEVER+R ERN
Sbjct: 69 ARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLREERNN 128
Query: 131 VANKMKGKIEPSERQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPIG 190
VA KMKGK+EPSER+RL+EEGK LKE L+ Q AQSIPN+THPDVP+G
Sbjct: 129 VAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPVG 188
Query: 191 GEDCSTIIKMVGSAPKFSFPVKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEMA 250
GED S I + VGS +FSFP+KDHLQLGK EVSGSKF+YLKNEAVLLEMA
Sbjct: 189 GEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMA 248
Query: 251 LLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIPV 310
LLNWTLS+VMK+G+TP+TTPEIVRSS+VEKCGFQPR DNTQ+YSI+ +DQCLIGTAEIPV
Sbjct: 249 LLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTAEIPV 308
Query: 311 GGLHMDSILADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEESE 370
GG+HMDSIL +S LPLKY+AFSHCFRTE T+GLYRVHQFSK EMFV C+PE+SE
Sbjct: 309 GGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDSE 368
Query: 371 YYHQELIKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNC 430
+HQELI+IEED+F+SLGLHFK LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASNC
Sbjct: 369 SFHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNC 428
Query: 431 TDYQSRRLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQED 490
TDYQSRRLGIRYRPSE GPKK K NL +FVHTLNATACAVPRM++CLLENYQQED
Sbjct: 429 TDYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQED 488
Query: 491 GSVLIPEPLRPFMGGLNIIARK 512
GSV+IPEPLRPFMGG+ +I K
Sbjct: 489 GSVVIPEPLRPFMGGIELIKPK 510
>AT1G11870.3 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase |
chr1:4003895-4006150 FORWARD LENGTH=402
Length = 402
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 226/322 (70%), Positives = 262/322 (81%)
Query: 70 GGKPQWKATIDFKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERN 129
+P WKA IDFKWI+DNKEAV NIRNRNS+ANL+ VL LY++M +LQKEVER+R ERN
Sbjct: 70 AARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLREERN 129
Query: 130 AVANKMKGKIEPSERQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPI 189
VA KMKGK+EPSER+RL+EEGK LKE L+ Q AQSIPN+THPDVP+
Sbjct: 130 NVAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPV 189
Query: 190 GGEDCSTIIKMVGSAPKFSFPVKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEM 249
GGED S I + VGS +FSFP+KDHLQLGK EVSGSKF+YLKNEAVLLEM
Sbjct: 190 GGEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEM 249
Query: 250 ALLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIP 309
ALLNWTLS+VMK+G+TP+TTPEIVRSS+VEKCGFQPR DNTQ+YSI+ +DQCLIGTAEIP
Sbjct: 250 ALLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTAEIP 309
Query: 310 VGGLHMDSILADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEES 369
VGG+HMDSIL +S LPLKY+AFSHCFRTE T+GLYRVHQFSK EMFV C+PE+S
Sbjct: 310 VGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDS 369
Query: 370 EYYHQELIKIEEDIFSSLGLHF 391
E +HQELI+IEED+F+SLGLHF
Sbjct: 370 ESFHQELIQIEEDLFTSLGLHF 391
>AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA
ligase | chr5:9695087-9697154 FORWARD LENGTH=451
Length = 451
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 231/429 (53%), Gaps = 21/429 (4%)
Query: 86 DNKEAVAANIRNRNSHANL-DLVLHLYDSMFHLQKEVERVRGERNAVANKM-KGKIEPSE 143
+N E + + R R + + D ++ L Q EV+ R E N + ++ + KI+ +
Sbjct: 13 NNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLNKQVAQLKIKKED 72
Query: 144 RQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPIGGEDCSTIIKMVGS 203
+I++ +K K+ A + + + + N+ H VP+ ++ + ++ +
Sbjct: 73 ASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDKDEANNLVIKLWG 132
Query: 204 APKFSFP---VKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEMALLNWTLSEVM 260
+FS P +K+H+ L + E++G++ ++LK + ++L AL+N+ L+ +
Sbjct: 133 EKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLNQALINFGLTFLK 192
Query: 261 KRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSI--EDSDQCLIGTAEIPVGGLHMDSI 318
KRGFT + P +R V+ KC + D ++Y + E D+ LI TAE P+ H+D
Sbjct: 193 KRGFTGLQPPFFMRKDVMAKCAQLAQFDE-ELYKVTGEGDDKYLIATAEQPLCAYHIDEW 251
Query: 319 LADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEESEYYH--QEL 376
+ + LPL+Y +S CFR E T G++RVHQF K+E F P E+ + E+
Sbjct: 252 IHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKIEQFCITGPNENASWEMLDEM 311
Query: 377 IKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSR 436
+K ED + +L L ++I+ + S L A +K D+EAW P E F E+ S SNCTDYQ+R
Sbjct: 312 MKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELVSCSNCTDYQAR 371
Query: 437 RLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIP 496
RL IRY G KKS N Q+VH LN+T A R I C+LENYQ+EDG V IP
Sbjct: 372 RLEIRY--------GQKKS--NEQTKQYVHMLNSTLTATERTICCILENYQREDG-VDIP 420
Query: 497 EPLRPFMGG 505
E L+PFMGG
Sbjct: 421 EVLQPFMGG 429