Miyakogusa Predicted Gene

Lj1g3v1514800.2
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1514800.2 tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase
OS=Medicago truncatula GN=MTR_3g099470 PE=4
SV=1,84.66,0,TRNASYNTHSER,Serine-tRNA ligase, type1;
tRNA-synt_2b,Aminoacyl-tRNA synthetase, class II (G/ H/ P/
S,CUFF.27429.2
         (513 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1...   688   0.0  
AT1G11870.1 | Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase ...   688   0.0  
AT1G11870.3 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1...   485   e-137
AT5G27470.1 | Symbols:  | seryl-tRNA synthetase / serine--tRNA l...   243   2e-64

>AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase |
           chr1:4003895-4006556 FORWARD LENGTH=514
          Length = 514

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/443 (72%), Positives = 367/443 (82%)

Query: 70  GGKPQWKATIDFKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERN 129
             +P WKA IDFKWI+DNKEAV  NIRNRNS+ANL+ VL LY++M +LQKEVER+R ERN
Sbjct: 70  AARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLREERN 129

Query: 130 AVANKMKGKIEPSERQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPI 189
            VA KMKGK+EPSER+RL+EEGK LKE L+             Q  AQSIPN+THPDVP+
Sbjct: 130 NVAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPV 189

Query: 190 GGEDCSTIIKMVGSAPKFSFPVKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEM 249
           GGED S I + VGS  +FSFP+KDHLQLGK           EVSGSKF+YLKNEAVLLEM
Sbjct: 190 GGEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEM 249

Query: 250 ALLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIP 309
           ALLNWTLS+VMK+G+TP+TTPEIVRSS+VEKCGFQPR DNTQ+YSI+ +DQCLIGTAEIP
Sbjct: 250 ALLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTAEIP 309

Query: 310 VGGLHMDSILADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEES 369
           VGG+HMDSIL +S LPLKY+AFSHCFRTE       T+GLYRVHQFSK EMFV C+PE+S
Sbjct: 310 VGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDS 369

Query: 370 EYYHQELIKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASN 429
           E +HQELI+IEED+F+SLGLHFK LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASN
Sbjct: 370 ESFHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASN 429

Query: 430 CTDYQSRRLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQE 489
           CTDYQSRRLGIRYRPSE    GPKK K NL   +FVHTLNATACAVPRM++CLLENYQQE
Sbjct: 430 CTDYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQE 489

Query: 490 DGSVLIPEPLRPFMGGLNIIARK 512
           DGSV+IPEPLRPFMGG+ +I  K
Sbjct: 490 DGSVVIPEPLRPFMGGIELIKPK 512


>AT1G11870.1 | Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase |
           chr1:4003895-4006556 FORWARD LENGTH=512
          Length = 512

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/442 (73%), Positives = 367/442 (83%)

Query: 71  GKPQWKATIDFKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERNA 130
            +P WKA IDFKWI+DNKEAV  NIRNRNS+ANL+ VL LY++M +LQKEVER+R ERN 
Sbjct: 69  ARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLREERNN 128

Query: 131 VANKMKGKIEPSERQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPIG 190
           VA KMKGK+EPSER+RL+EEGK LKE L+             Q  AQSIPN+THPDVP+G
Sbjct: 129 VAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPVG 188

Query: 191 GEDCSTIIKMVGSAPKFSFPVKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEMA 250
           GED S I + VGS  +FSFP+KDHLQLGK           EVSGSKF+YLKNEAVLLEMA
Sbjct: 189 GEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMA 248

Query: 251 LLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIPV 310
           LLNWTLS+VMK+G+TP+TTPEIVRSS+VEKCGFQPR DNTQ+YSI+ +DQCLIGTAEIPV
Sbjct: 249 LLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTAEIPV 308

Query: 311 GGLHMDSILADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEESE 370
           GG+HMDSIL +S LPLKY+AFSHCFRTE       T+GLYRVHQFSK EMFV C+PE+SE
Sbjct: 309 GGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDSE 368

Query: 371 YYHQELIKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNC 430
            +HQELI+IEED+F+SLGLHFK LDMA+ DLGAPAYRK D+EAWMPGL RFGEISSASNC
Sbjct: 369 SFHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNC 428

Query: 431 TDYQSRRLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQED 490
           TDYQSRRLGIRYRPSE    GPKK K NL   +FVHTLNATACAVPRM++CLLENYQQED
Sbjct: 429 TDYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQED 488

Query: 491 GSVLIPEPLRPFMGGLNIIARK 512
           GSV+IPEPLRPFMGG+ +I  K
Sbjct: 489 GSVVIPEPLRPFMGGIELIKPK 510


>AT1G11870.3 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase |
           chr1:4003895-4006150 FORWARD LENGTH=402
          Length = 402

 Score =  485 bits (1248), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 226/322 (70%), Positives = 262/322 (81%)

Query: 70  GGKPQWKATIDFKWIKDNKEAVAANIRNRNSHANLDLVLHLYDSMFHLQKEVERVRGERN 129
             +P WKA IDFKWI+DNKEAV  NIRNRNS+ANL+ VL LY++M +LQKEVER+R ERN
Sbjct: 70  AARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLREERN 129

Query: 130 AVANKMKGKIEPSERQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPI 189
            VA KMKGK+EPSER+RL+EEGK LKE L+             Q  AQSIPN+THPDVP+
Sbjct: 130 NVAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPV 189

Query: 190 GGEDCSTIIKMVGSAPKFSFPVKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEM 249
           GGED S I + VGS  +FSFP+KDHLQLGK           EVSGSKF+YLKNEAVLLEM
Sbjct: 190 GGEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEM 249

Query: 250 ALLNWTLSEVMKRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSIEDSDQCLIGTAEIP 309
           ALLNWTLS+VMK+G+TP+TTPEIVRSS+VEKCGFQPR DNTQ+YSI+ +DQCLIGTAEIP
Sbjct: 250 ALLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTAEIP 309

Query: 310 VGGLHMDSILADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEES 369
           VGG+HMDSIL +S LPLKY+AFSHCFRTE       T+GLYRVHQFSK EMFV C+PE+S
Sbjct: 310 VGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDS 369

Query: 370 EYYHQELIKIEEDIFSSLGLHF 391
           E +HQELI+IEED+F+SLGLHF
Sbjct: 370 ESFHQELIQIEEDLFTSLGLHF 391


>AT5G27470.1 | Symbols:  | seryl-tRNA synthetase / serine--tRNA
           ligase | chr5:9695087-9697154 FORWARD LENGTH=451
          Length = 451

 Score =  243 bits (621), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 231/429 (53%), Gaps = 21/429 (4%)

Query: 86  DNKEAVAANIRNRNSHANL-DLVLHLYDSMFHLQKEVERVRGERNAVANKM-KGKIEPSE 143
           +N E +  + R R +   + D ++ L       Q EV+  R E N +  ++ + KI+  +
Sbjct: 13  NNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLNKQVAQLKIKKED 72

Query: 144 RQRLIEEGKKLKEGLIAXXXXXXXXXXXXQQEAQSIPNITHPDVPIGGEDCSTIIKMVGS 203
              +I++ +K K+   A            + + + + N+ H  VP+  ++ + ++  +  
Sbjct: 73  ASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDKDEANNLVIKLWG 132

Query: 204 APKFSFP---VKDHLQLGKXXXXXXXXXXXEVSGSKFYYLKNEAVLLEMALLNWTLSEVM 260
             +FS P   +K+H+ L +           E++G++ ++LK + ++L  AL+N+ L+ + 
Sbjct: 133 EKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLNQALINFGLTFLK 192

Query: 261 KRGFTPITTPEIVRSSVVEKCGFQPRADNTQIYSI--EDSDQCLIGTAEIPVGGLHMDSI 318
           KRGFT +  P  +R  V+ KC    + D  ++Y +  E  D+ LI TAE P+   H+D  
Sbjct: 193 KRGFTGLQPPFFMRKDVMAKCAQLAQFDE-ELYKVTGEGDDKYLIATAEQPLCAYHIDEW 251

Query: 319 LADSLLPLKYVAFSHCFRTEXXXXXXXTRGLYRVHQFSKVEMFVFCRPEESEYYH--QEL 376
           +  + LPL+Y  +S CFR E       T G++RVHQF K+E F    P E+  +    E+
Sbjct: 252 IHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKIEQFCITGPNENASWEMLDEM 311

Query: 377 IKIEEDIFSSLGLHFKILDMASEDLGAPAYRKSDVEAWMPGLERFGEISSASNCTDYQSR 436
           +K  ED + +L L ++I+ + S  L   A +K D+EAW P  E F E+ S SNCTDYQ+R
Sbjct: 312 MKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELVSCSNCTDYQAR 371

Query: 437 RLGIRYRPSEALAPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIP 496
           RL IRY        G KKS  N    Q+VH LN+T  A  R I C+LENYQ+EDG V IP
Sbjct: 372 RLEIRY--------GQKKS--NEQTKQYVHMLNSTLTATERTICCILENYQREDG-VDIP 420

Query: 497 EPLRPFMGG 505
           E L+PFMGG
Sbjct: 421 EVLQPFMGG 429