Miyakogusa Predicted Gene

Lj1g3v1501530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1501530.1 Non Chatacterized Hit- tr|I1GU71|I1GU71_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,50.98,4e-18,coiled-coil,NULL; seg,NULL,CUFF.27417.1
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24930.1 | Symbols:  | thylakoid lumenal 17.9 kDa protein, ch...   144   2e-35

>AT4G24930.1 | Symbols:  | thylakoid lumenal 17.9 kDa protein,
           chloroplast | chr4:12821496-12822389 REVERSE LENGTH=225
          Length = 225

 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 92/116 (79%), Gaps = 4/116 (3%)

Query: 47  PSSAIPSLNSQPPSTSLTTPFSQAKNLKVGLENGKIRTCPSINPGCISSNPKSSSFAFPW 106
           P+ AIPSL+S  P   LTTPF+Q+K ++ GL NGKIR CPS NPGC+S+NP SSSF+FP 
Sbjct: 60  PALAIPSLSSSQP---LTTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPL 116

Query: 107 LIPENSLDNPIQKLREAILKTQKNVKFLLVEDTPDGQYMQAEVD-AGFDRDVLEFL 161
            IPE    +PI+KL+EAI+ TQKN KF+++EDTP G+Y++AEV+  GF RDV+EFL
Sbjct: 117 TIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFL 172