Miyakogusa Predicted Gene

Lj1g3v1499460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1499460.1 tr|B9PDP4|B9PDP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_585654 PE=4
SV=1,53.73,0.0000000002, ,CUFF.27408.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63520.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box doma...   184   6e-47

>AT5G63520.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box domain,
           Skp2-like (InterPro:IPR022364), FIST C domain
           (InterPro:IPR019494), FIST domain, N-terminal
           (InterPro:IPR013702); Has 137 Blast hits to 137 proteins
           in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6;
           Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes -
           11 (source: NCBI BLink). | chr5:25426300-25429093
           REVERSE LENGTH=519
          Length = 519

 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 152/241 (63%), Gaps = 7/241 (2%)

Query: 1   MDIKEYSASVSS-CKFPVGIILFGESSSDMKLVLEKLDYAMPMDTIIVGDERGSFVYCSG 59
           MDI+ Y + VS     P  +ILF E +   + VL KLDYAMP +T+IVG + G F++  G
Sbjct: 196 MDIRNYMSMVSGHAAAPACLILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRG 255

Query: 60  NDSRSIRGRTRDTEAVA-LVFAQDRDRSSGS--IRFHIAFSNGVSTVGARYKAVSVKTNF 116
           N+ R+++ +  D   +A L+FA+DR R + +  I+F  A SNG+S+V  RYKA +V  + 
Sbjct: 256 NEPRNVQLQKDDIRVLAGLIFARDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSL 315

Query: 117 -DDC-STWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIG-AEKP 173
              C ST LTA+R G+ E+LDG  IL +I++ LEN I   + Y+GVIK RK+SIG  EKP
Sbjct: 316 GPSCPSTLLTAKRRGEAEVLDGDQILDDIDNILENYIWENDSYLGVIKRRKYSIGLEEKP 375

Query: 174 MPRTSIAYHGVVGGDEEYLYVDGIGIKTGDIFQFYHSDPKAALGSLTEVHDALNNIKLEK 233
              +S+ +H V G D++ L VDG GIKTGD FQ Y  D K A  +L +V   L N+K + 
Sbjct: 376 KIMSSLVFHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLKSKP 435

Query: 234 N 234
           N
Sbjct: 436 N 436