Miyakogusa Predicted Gene
- Lj1g3v1486310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1486310.1 tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex subunit
SMARCC2 OS=Medicago truncatula GN=MTR_3g099000 PE=4
S,73.8,0,SWIRM,SWIRM domain; SANT,SANT domain;
Myb_DNA-binding,SANT/Myb domain; SANT SWI3, ADA2, N-CoR and
T,CUFF.27402.1
(556 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose non... 390 e-108
AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 |... 101 1e-21
AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose non... 75 1e-13
AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protei... 73 6e-13
AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protei... 73 6e-13
AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protei... 73 6e-13
AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protei... 73 6e-13
>AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose
nonfermenting 3A | chr2:19532034-19534251 FORWARD
LENGTH=512
Length = 512
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 240/544 (44%), Positives = 309/544 (56%), Gaps = 47/544 (8%)
Query: 16 DSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYRE 75
D +E+ELYTIP+ S WF WD+IHE ER EFF +SI+RTPKVYKEYRDF+INK+RE
Sbjct: 5 DPSAEIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFRE 64
Query: 76 DPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYXXXXXXXXXXXXXXXXXXXXXXX 135
D R+LTFT VRK LVGDV LL+KVFLFLE GLIN+
Sbjct: 65 DTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQG-- 122
Query: 136 XXXXXXAPNGIRVVATPNSLKPLSAPRNXXXXXXXXXXXXXXXXXXLPPLASFADVYGDL 195
P GIRV ATPNSL+P++AP +PPL S++DV+ DL
Sbjct: 123 ------TPAGIRVTATPNSLRPITAP--------PLVEERVETGIKVPPLTSYSDVFSDL 168
Query: 196 MSAKE-LNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSVK 254
L C CG++C Y+ K IC KCFKNGNYGE + +DF L ++
Sbjct: 169 KKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKLIGNS----- 223
Query: 255 QSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRXX 314
+ VWTE E LLLLESVLKHGDDWEL++QSV TK++LDCISKLIELPFGE ++GSA
Sbjct: 224 AAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRL 283
Query: 315 XXXXXXXXXXXXXQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNES--PSKRQRVAA 372
+ ++ E +T Q E T +E D VNE P+KR+RVA
Sbjct: 284 NPSIL------------TEDENTEQVQTDGQEHEETETREEKEDRVNEDEPPAKRKRVAL 331
Query: 373 LSESSSSLMKQVGLISTSVDPHXXXXXXXXXXXXLCDENLCPREIFDVEEDYASSANSLI 432
+SE SSLMKQV +++ V P LCDE CP+EIFD +DY++
Sbjct: 332 ISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDT-DDYSNFT---- 386
Query: 433 SDSERAHEVEGLEMDRSTQAEKDDRGPKDDIPLPXXXXXXXXXXXXXXXXXXXXXXDQED 492
+RA+ + +M+ Q EKD GP+ +P+ DQE+
Sbjct: 387 --VDRANGEKDTDMEEQ-QEEKD--GPQ-GLPVALRIRASVATALGAAAAQAKILADQEE 440
Query: 493 REIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRS 552
RE+E L AT+IE Q+ KLQ K+K D+LE +M +E IE +K++I+ ER+ VLQ FRS
Sbjct: 441 REMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVSVLQCAFRS 500
Query: 553 GITR 556
GIT+
Sbjct: 501 GITK 504
>AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 |
chr2:14229023-14231149 FORWARD LENGTH=469
Length = 469
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 68/96 (70%)
Query: 17 SESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYRED 76
S S+++ +PS S WF+W +I++ E +L EFFD S S+ PK Y R+ +I +YR+D
Sbjct: 41 SSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDD 100
Query: 77 PSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
RK++FT+VR++LV DV +R+VF FL+S GLINY
Sbjct: 101 HPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINY 136
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 151/354 (42%), Gaps = 64/354 (18%)
Query: 202 NCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTVWTE 261
NC C C + K + T+C +C+ NY + +F E +E S + W++
Sbjct: 174 NCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPE---WSD 230
Query: 262 GETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRXXXXXXXXX 321
E LLLLE+V+ +GDDW+ VA V +T+ DC+S+ ++LPFGE +
Sbjct: 231 KEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV-------------- 276
Query: 322 XXXXXXQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLM 381
SD ++ + +Q + + D SP+KR ++ L+++S+ +M
Sbjct: 277 ----------KESDSEDGLEMFDQIKDSDIPESEGIDKDGSSPNKRIKLTPLADASNPIM 326
Query: 382 KQVGLISTSVDPHXXXXXXXXXXXXLCDENLCPREIFDVEEDYASSANSLISDSERAHEV 441
Q +S + L D D E D +S + D+ A
Sbjct: 327 AQAAFLSALAGTNVAEAAARAAVRALSD--------VDYEADKNASRDPNRQDANAASSG 378
Query: 442 EGLEMDRSTQAEKDDRGPKDDIPLPXXXXXXXXXXXXXXXXXXXXXXDQEDREIEHLVAT 501
E T + +R D L ++E+ E+E +
Sbjct: 379 E-------TTRNESERAWADAKSL----------------------IEKEEHEVEGAIKE 409
Query: 502 IIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRSGIT 555
+E ++ K++ ++ HF++L+L M++ ++EE+++ + +++++ T ++ T
Sbjct: 410 TVEVEMKKIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIFFHTRKARKT 463
>AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose
nonfermenting 3C | chr1:7620156-7623978 REVERSE
LENGTH=807
Length = 807
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 139/355 (39%), Gaps = 40/355 (11%)
Query: 202 NCGICGDKCGFEHYRSTK-DNFTICMKCFKNGNYGEKRSVEDFI-LNESNENSVKQSTVW 259
+C C +++S K + +C CF +G + S DF+ ++ + W
Sbjct: 344 HCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNW 403
Query: 260 TEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRXXXXXXX 319
T+ ETLLLLE+V + ++W +A V +K+K CI + LP + +L +
Sbjct: 404 TDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVE-------- 455
Query: 320 XXXXXXXXQVQSSSSDHQETSKTQNQTPELTSEKEPNGD--AVNESPSKRQRVAALSESS 377
+ ++ DH+ T + NGD +E S + +S
Sbjct: 456 -VSGVTNTENPTNGYDHKGT--------------DSNGDLPGYSEQGSDTEIKLPFVKSP 500
Query: 378 SSLMKQVGLISTSVDPHXXXXXXXXXXXXLCDENLCPREIFDVEEDYASSANSLISDSER 437
+ +M V ++++V P L +++ E +E + + D E
Sbjct: 501 NPVMALVAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKE-------ASLLDGEN 553
Query: 438 AHEVEGLEMDRSTQAEKDDRGPKDDIPLPXXXXXXXXXXXXXXXXXXXXXXDQEDREIEH 497
+ + AE P+D + D E+REI+
Sbjct: 554 QQQDGAHKTSSQNGAEAQTPLPQDKV------MAAFRAGLSAAATKAKLFADHEEREIQR 607
Query: 498 LVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRS 552
L A I+ Q+ +++ K+K F E+E L+ KE ++E+ + ER +L F S
Sbjct: 608 LSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGS 662
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 23 LYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLT 82
++ +P S WFA + + ER + +FF G S + TP+ Y E+R+ +++KY E+P + LT
Sbjct: 175 VHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLT 234
Query: 83 FTEVRKSLVG-DVTLLRKVFLFLESCGLINY 112
++ + + G D+ +VF FL+ G+INY
Sbjct: 235 ISDCQGLVDGVDIEDFARVFRFLDHWGIINY 265
>AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
chr4:16461069-16464993 FORWARD LENGTH=986
Length = 986
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%)
Query: 23 LYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLT 82
++ +P+ WF+W++IH E +L FF+G RT +VY+E R++++ K+ +P+ ++
Sbjct: 144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIE 203
Query: 83 FTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
++ + VGD ++V FL+ GLIN+
Sbjct: 204 LKDLTELEVGDSEAKQEVMEFLDYWGLINF 233
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 186 ASFADVYGDLMSAKEL----------NCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNY 234
A+ + ++ D M+A EL +C C C + Y K +F +C +CF +G +
Sbjct: 283 ATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKF 342
Query: 235 GEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCI 294
S DFIL E E S WT+ ETLLLLE++ ++W +A+ V TKTK C+
Sbjct: 343 SSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCM 402
Query: 295 SKLIELPFGELML 307
+++P + L
Sbjct: 403 LHFLQMPIEDAFL 415
>AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
chr4:16461069-16464993 FORWARD LENGTH=985
Length = 985
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%)
Query: 23 LYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLT 82
++ +P+ WF+W++IH E +L FF+G RT +VY+E R++++ K+ +P+ ++
Sbjct: 144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIE 203
Query: 83 FTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
++ + VGD ++V FL+ GLIN+
Sbjct: 204 LKDLTELEVGDSEAKQEVMEFLDYWGLINF 233
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 186 ASFADVYGDLMSAKEL----------NCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNY 234
A+ + ++ D M+A EL +C C C + Y K +F +C +CF +G +
Sbjct: 283 ATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKF 342
Query: 235 GEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCI 294
S DFIL E E S WT+ ETLLLLE++ ++W +A+ V TKTK C+
Sbjct: 343 SSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCM 402
Query: 295 SKLIELPFGELML 307
+++P + L
Sbjct: 403 LHFLQMPIEDAFL 415
>AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
chr4:16461069-16464993 FORWARD LENGTH=983
Length = 983
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%)
Query: 23 LYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLT 82
++ +P+ WF+W++IH E +L FF+G RT +VY+E R++++ K+ +P+ ++
Sbjct: 144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIE 203
Query: 83 FTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
++ + VGD ++V FL+ GLIN+
Sbjct: 204 LKDLTELEVGDSEAKQEVMEFLDYWGLINF 233
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 186 ASFADVYGDLMSAKEL----------NCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNY 234
A+ + ++ D M+A EL +C C C + Y K +F +C +CF +G +
Sbjct: 283 ATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKF 342
Query: 235 GEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCI 294
S DFIL E E S WT+ ETLLLLE++ ++W +A+ V TKTK C+
Sbjct: 343 SSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCM 402
Query: 295 SKLIELPFGELML 307
+++P + L
Sbjct: 403 LHFLQMPIEDAFL 415
>AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
chr4:16461069-16464993 FORWARD LENGTH=985
Length = 985
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 56/90 (62%)
Query: 23 LYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLT 82
++ +P+ WF+W++IH E +L FF+G RT +VY+E R++++ K+ +P+ ++
Sbjct: 144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIE 203
Query: 83 FTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
++ + VGD ++V FL+ GLIN+
Sbjct: 204 LKDLTELEVGDSEAKQEVMEFLDYWGLINF 233
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 186 ASFADVYGDLMSAKEL----------NCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNY 234
A+ + ++ D M+A EL +C C C + Y K +F +C +CF +G +
Sbjct: 283 ATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKF 342
Query: 235 GEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCI 294
S DFIL E E S WT+ ETLLLLE++ ++W +A+ V TKTK C+
Sbjct: 343 SSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCM 402
Query: 295 SKLIELPFGELML 307
+++P + L
Sbjct: 403 LHFLQMPIEDAFL 415