Miyakogusa Predicted Gene

Lj1g3v1464140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1464140.1 Non Chatacterized Hit- tr|C5WSW0|C5WSW0_SORBI
Putative uncharacterized protein Sb01g001150
OS=Sorghu,78.57,1e-18,SAM_DOMAIN,Sterile alpha motif domain;
SAM_1,Sterile alpha motif, type 1; STERILE ALPHA MOTIF (SAM)
,NODE_46709_length_1424_cov_20.514748.path2.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48800.1 | Symbols:  | Sterile alpha motif (SAM) domain-conta...   133   1e-31
AT5G23680.1 | Symbols:  | Sterile alpha motif (SAM) domain-conta...   108   3e-24

>AT3G48800.1 | Symbols:  | Sterile alpha motif (SAM)
           domain-containing protein | chr3:18095825-18096661
           REVERSE LENGTH=278
          Length = 278

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 143/288 (49%), Gaps = 48/288 (16%)

Query: 1   MTEV-PAPEAQLTGGVTVAPNKPSEPTAT----GSKRHRRPSVRLGEIG----DQPNDSH 51
           M E+ P    Q  GGV   P   S         GSKR RRPSVRLGEIG     Q +  H
Sbjct: 1   MAELQPVDGQQTNGGVVTIPASTSAEATAIAAAGSKRLRRPSVRLGEIGGDQYQQQHHHH 60

Query: 52  PLRRXXXXXXXKSSWRLPFSNA----SGKHSKTRPLTNLT-GFG--GTL----EGDDDD- 99
                      KS W    ++     + K S+TR LTNL+ G+   GTL    EG+ D  
Sbjct: 61  AAAAAYDSQGRKSKWTPTTTSGNRKDTSKSSRTRTLTNLSSGYENIGTLDDEREGNVDSF 120

Query: 100 -VVRWKLKDXXXXXXXXXXXXXXXXXNWVAS-----------SQIEG--EDF---DAESP 142
            V  W++K                  NWV+             ++EG   DF   D+ESP
Sbjct: 121 GVGSWRVK----KRVGSSAAAKRVRSNWVSKVGDGDEKISGGEELEGGFRDFSREDSESP 176

Query: 143 VLHSAENLGXXXXXXXXYRATLQHYHEENARDNKNGNGGGVRHGEDWIRIWLNGLGLGRY 202
           +    E+L          R    +    N     N +GGG    ++ ++IWL  LGLGRY
Sbjct: 177 IKE--ESLDRDGGGFYGRRRYESNNSSGNREFESNMDGGG----KEGVKIWLQELGLGRY 230

Query: 203 APVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGFS 250
            P+FEIHE+D+EVL LLTLEDLKDMGINAVGSRRK++CAIQKLG+ FS
Sbjct: 231 WPMFEIHEVDEEVLPLLTLEDLKDMGINAVGSRRKMFCAIQKLGREFS 278


>AT5G23680.1 | Symbols:  | Sterile alpha motif (SAM)
           domain-containing protein | chr5:7985573-7986460 REVERSE
           LENGTH=295
          Length = 295

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 59/66 (89%)

Query: 185 HGEDWIRIWLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQK 244
            G++ ++IWL  LGLGRY P+FE+HE+D++VL LLTLEDLKDMGINAVGSRRK+YCAIQK
Sbjct: 230 RGKEGVKIWLQELGLGRYWPMFEMHEVDEQVLPLLTLEDLKDMGINAVGSRRKMYCAIQK 289

Query: 245 LGKGFS 250
           LG+ FS
Sbjct: 290 LGREFS 295