Miyakogusa Predicted Gene

Lj1g3v1454010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1454010.1 tr|E5GBL8|E5GBL8_CUCME ATP-dependent clp protease
OS=Cucumis melo subsp. melo PE=3 SV=1,92.31,8e-19,seg,NULL; no
description,NULL,NODE_36035_length_440_cov_1652.984131.path1.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | C...    49   5e-07

>AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC
           homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929
          Length = 929

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 1   MRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXXXLNGSSGTP----ESLPEALPV 52
           MRLLEDSMAEKMLAREIKE                LNG SGTP    E   ++LPV
Sbjct: 873 MRLLEDSMAEKMLAREIKEGDSVIVDVDAEGNVTVLNGGSGTPTTSLEEQEDSLPV 928