Miyakogusa Predicted Gene

Lj1g3v1388160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1388160.1 Non Chatacterized Hit- tr|E1ZML2|E1ZML2_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,42.2,1e-17,Sdh5,Protein of unknown function DUF339; PROTEIN
EMI5 HOMOLOG, MITOCHONDRIAL,NULL; YgfY-like,Protein,CUFF.27310.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51040.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   229   7e-61
AT5G51040.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   222   1e-58
AT5G51040.2 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   215   1e-56

>AT5G51040.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF339
           (InterPro:IPR005631); Has 532 Blast hits to 532 proteins
           in 207 species: Archae - 0; Bacteria - 285; Metazoa -
           16; Fungi - 41; Plants - 40; Viruses - 0; Other
           Eukaryotes - 150 (source: NCBI BLink). |
           chr5:20750700-20751790 FORWARD LENGTH=188
          Length = 188

 Score =  229 bits (584), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 139/187 (74%), Gaps = 10/187 (5%)

Query: 3   SLRRAAINIHRVINANKRNITASTTPLTSRPLY----------GYSKISPFTSYPQSYEI 52
           + R+A IN+HR+I +      +S  P  +   Y          G       T+  Q+++I
Sbjct: 2   ATRKALINVHRIIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDI 61

Query: 53  DLSTEESKRRSLNRLLYRSKQRGFLELDLVLGKWVEDNIHSLDENRIKSLIHVLDLENPD 112
           DLS EE+KRR++NRLLYRSKQRGFLELDLVLG WVE+N++S+DEN +KSLIHVL+LENPD
Sbjct: 62  DLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPD 121

Query: 113 LWKWLSGQEQPPESISANPVFAAIKEKLMKNLDSHAAPEVRAMPGQPWVRGWDDIKKGPG 172
           LWKWL+ QEQPPE++S+NPVF+A+ EK+MKNL+ HAAPE RA  GQPWVRGWDD K+G  
Sbjct: 122 LWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRD 181

Query: 173 GPVTGNQ 179
            P++GNQ
Sbjct: 182 APISGNQ 188


>AT5G51040.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF339
           (InterPro:IPR005631). | chr5:20750700-20751790 FORWARD
           LENGTH=197
          Length = 197

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 139/196 (70%), Gaps = 19/196 (9%)

Query: 3   SLRRAAINIHRVINANKRNITASTTPLTSRPLY----------GYSKISPFTSYPQSYEI 52
           + R+A IN+HR+I +      +S  P  +   Y          G       T+  Q+++I
Sbjct: 2   ATRKALINVHRIIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDI 61

Query: 53  DLSTEESKRRSLNRLLYRSKQRGFLELDLVLGKWVEDNIHSLDENRIKSLIHVLDL---- 108
           DLS EE+KRR++NRLLYRSKQRGFLELDLVLG WVE+N++S+DEN +KSLIHVL+L    
Sbjct: 62  DLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLVESE 121

Query: 109 -----ENPDLWKWLSGQEQPPESISANPVFAAIKEKLMKNLDSHAAPEVRAMPGQPWVRG 163
                ENPDLWKWL+ QEQPPE++S+NPVF+A+ EK+MKNL+ HAAPE RA  GQPWVRG
Sbjct: 122 ATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRG 181

Query: 164 WDDIKKGPGGPVTGNQ 179
           WDD K+G   P++GNQ
Sbjct: 182 WDDFKRGRDAPISGNQ 197


>AT5G51040.2 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF339
           (InterPro:IPR005631); Has 368 Blast hits to 368 proteins
           in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8;
           Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes -
           91 (source: NCBI BLink). | chr5:20750700-20751790
           FORWARD LENGTH=184
          Length = 184

 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 135/187 (72%), Gaps = 14/187 (7%)

Query: 3   SLRRAAINIHRVINANKRNITASTTPLTSRPLY----------GYSKISPFTSYPQSYEI 52
           + R+A IN+HR+I +      +S  P  +   Y          G       T+  Q+++I
Sbjct: 2   ATRKALINVHRIIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDI 61

Query: 53  DLSTEESKRRSLNRLLYRSKQRGFLELDLVLGKWVEDNIHSLDENRIKSLIHVLDLENPD 112
           DLS EE+KRR++NR    SKQRGFLELDLVLG WVE+N++S+DEN +KSLIHVL+LENPD
Sbjct: 62  DLSNEENKRRTINR----SKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPD 117

Query: 113 LWKWLSGQEQPPESISANPVFAAIKEKLMKNLDSHAAPEVRAMPGQPWVRGWDDIKKGPG 172
           LWKWL+ QEQPPE++S+NPVF+A+ EK+MKNL+ HAAPE RA  GQPWVRGWDD K+G  
Sbjct: 118 LWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRD 177

Query: 173 GPVTGNQ 179
            P++GNQ
Sbjct: 178 APISGNQ 184