Miyakogusa Predicted Gene
- Lj1g3v1386430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1386430.1 tr|D3GBV0|D3GBV0_LOTJA Reduced leaflet 1 OS=Lotus
japonicus GN=REL1 PE=2 SV=1,99.38,0,seg,NULL; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED,NULL;
coiled,CUFF.27296.1
(642 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing prote... 573 e-163
AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of ... 60 5e-09
AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 49 8e-06
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 49 8e-06
>AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing protein
/ XS zinc finger domain-containing protein-related |
chr5:7943621-7945874 FORWARD LENGTH=625
Length = 625
Score = 573 bits (1477), Expect = e-163, Method: Compositional matrix adjust.
Identities = 312/635 (49%), Positives = 423/635 (66%), Gaps = 23/635 (3%)
Query: 1 MSSRRGGVSKGKTIAESH-AQIEQLTQGVADTNLDPGQDDG-QWEVYGKKSKNRAGSSAA 58
MSSR G +SK K + + ++EQL QG+A T L QDDG +WEV KK+KN+ G+++
Sbjct: 1 MSSRAGPMSKEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSG 60
Query: 59 KPWGSQAHNSNP-RAWGNTNMAQKPGMQNLGGGAGRASGNPWQTQNANLRRPAGRGNGGP 117
K W SQ NSNP RAWG + + G + AN+ +GRG
Sbjct: 61 KTWVSQ--NSNPPRAWGGQQQGRGSNVSGRGNNVSGRGNGNGRGIQANI---SGRG---- 111
Query: 118 QVPSTGYQNYNVTSNPLIRPPLEHGWNWQSRTGSMQSNVRNEFPPXXXXXXXXXXXXXXX 177
+ S Y N V P+ RPPLE GWNWQ+R GS Q EFP
Sbjct: 112 RALSRKYDNNFVAPPPVSRPPLEGGWNWQARGGSAQHTAVQEFP---DVEDDVDNASEEE 168
Query: 178 XXXXXXXXXXXXXXXXXXXXXASQKSHETRKKSRWFREFFEILDGLTIEQINDPERQWHC 237
SQKSH +RK+++WF++FF LD L+IEQIN+P+RQWHC
Sbjct: 169 NDSDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHC 228
Query: 238 AACQGGPGAIDWFRGLQPLMAHAKTKGSKRVKIHRELAVLLDEELQRRGTSVIPAGEAFG 297
ACQ GPGAIDW+ L PL+AHA+TKG++RVK+HRELA +L+++LQ RG SVIP GE +G
Sbjct: 229 PACQNGPGAIDWY-NLHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYG 287
Query: 298 KWKGLKNEEKDHEIVWPPMVVIQNTKLEQDENDKWIGMGNQELLNSFSTYAAVRARHAYG 357
+WKGL +EKD+EIVWPPMV+I NT+L++D+NDKW+GMGNQELL F Y A+RARH+YG
Sbjct: 288 QWKGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYG 347
Query: 358 PQGHRGMSILIFEASASGYLEAERLHKHFSEQGTDKNAWFGGRRSLFLPGGNRQLFGYMA 417
PQGHRGMS+L+FE+SA+GYLEAERLH+ +E G D+ AW G +RS+F GG RQL+G++A
Sbjct: 348 PQGHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAW-GQKRSMF-SGGVRQLYGFLA 405
Query: 418 TKEDLDIFNKHCPVKSSSRLKYDMRSYQEMVVNQIRQMNEDNQQLIYLKNKVDKEKKHSK 477
TK+DLDIFN+H K +RLK++++SYQEMVV ++RQ++EDNQQL Y KNK+ K+ KH+K
Sbjct: 406 TKQDLDIFNQHSQGK--TRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAK 463
Query: 478 ALEESFGIVSEKLRKTMQENRIVLLRTKEQQKENKEEMDMQEEFFKEQIRVIHDSRNAKD 537
LEES I+SEKLR+T ++NRIV RTK Q ++N+EEMD + FF + I+ IH+ R+AK+
Sbjct: 464 VLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKE 523
Query: 538 EDFERMQQEEREKV---KQSSAGPLNAEERRLKVDEYLKFVEVQDKEMENFVAQKEELIQ 594
E+FE +QQ+ER KV +Q + P + ++ R + +E F+E Q+KEME FV ++E LI+
Sbjct: 524 ENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIK 583
Query: 595 AHDESIAAMKRRHWXXXXXXXXXXXXXLAKLMQKY 629
++ + MK+RH L +LM K+
Sbjct: 584 DQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKH 618
>AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of
unknown function XS (InterPro:IPR005380); BEST
Arabidopsis thaliana protein match is: XS
domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1);
Has 565 Blast hits to 510 proteins in 121 species:
Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32;
Plants - 51; Viruses - 4; Other Eukaryotes - 195
(source: NCBI BLink). | chr3:7953455-7957605 FORWARD
LENGTH=510
Length = 510
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 35/179 (19%)
Query: 270 IHRELAVLLDEELQR-----RGTSVIPAGEAFGKWKGLKNEEKDHEIVWPPMVVIQNTKL 324
+H+ L VL+ + + +PA EA L I+WPP V++QNT
Sbjct: 320 LHKALCVLMGWNFSKAPDNSKAYQNLPADEAAINQAQL--------IIWPPHVIVQNTST 371
Query: 325 EQDENDKWIGMGNQELLNSFSTYAAV--RARHAYGPQGHRGMSILIFEASASGYLEAERL 382
+ + + G GN+ + N +++ YG +GH G+++ F SG +A R+
Sbjct: 372 GKGKEGRMEGFGNKTMDNRIRELGLTGGKSKSLYGREGHLGITLFKFAGDDSGLRDAMRM 431
Query: 383 HKHFSEQGTDKNAWFGGRRSLFLPGGN------------------RQLFGYMATKEDLD 423
++F + + +W GR P + R +GY+AT DLD
Sbjct: 432 AEYFEKINRGRKSW--GRVQPLTPSKDDEKNPGLVEVDGRTGEKKRIFYGYLATVTDLD 488
>AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 128/296 (43%), Gaps = 34/296 (11%)
Query: 260 AKTKGSKRVKIHRELAVLLDEELQRRGTSVIPAGEAFGKWKGLKNEEKDHEIVWPPMVVI 319
AK K S H L L ++L + P+ + +++ + D ++V+P ++
Sbjct: 81 AKEKAS-----HLALVKYLQQDLADSASEAEPSSKRQKNGNPIQDCDHDEKLVYPWKGIV 135
Query: 320 QNTKLEQDENDKWIGMGNQELLNSFST--YAAVRARHAYGPQGHRGMSILIFEASASGYL 377
N + ++ + G +L + + + R R + GH G +I+ F +G
Sbjct: 136 VNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLH 195
Query: 378 EAERLHKHFSEQGTDKNAWFGGRRSLFLPGGNRQLFGYMATKEDLDIFNKHCPVKSSSRL 437
K ++ G K W G L+G++A +D +N + + + R
Sbjct: 196 NGLLFDKAYTVDGHGKKDWLKK------DGPKLGLYGWIARADD---YNGNNIIGENLRK 246
Query: 438 KYDMRSYQEMVVNQIRQMNEDNQQLIY--LKNKVDKEKKHSKALEESFGIVSEKLRKTMQ 495
D+++ E+ + R+ Q+L+ L+ V+++KK K +EE + SE+L + M+
Sbjct: 247 TGDLKTIAELTEEEARK-----QELLVQNLRQLVEEKKKDMKEIEELCSVKSEELNQLME 301
Query: 496 ENRIVLLRTKEQQKENKEEMDMQEEFFKEQIRVIHDSRNAKDEDFERMQQEEREKV 551
E + K QQK +E +QE +++ D E +R+ + ER+K+
Sbjct: 302 E------KEKNQQKHYRELNAIQERTMSHIQKIVDDH-----EKLKRLLESERKKL 346
>AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 128/296 (43%), Gaps = 34/296 (11%)
Query: 260 AKTKGSKRVKIHRELAVLLDEELQRRGTSVIPAGEAFGKWKGLKNEEKDHEIVWPPMVVI 319
AK K S H L L ++L + P+ + +++ + D ++V+P ++
Sbjct: 81 AKEKAS-----HLALVKYLQQDLADSASEAEPSSKRQKNGNPIQDCDHDEKLVYPWKGIV 135
Query: 320 QNTKLEQDENDKWIGMGNQELLNSFST--YAAVRARHAYGPQGHRGMSILIFEASASGYL 377
N + ++ + G +L + + + R R + GH G +I+ F +G
Sbjct: 136 VNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLH 195
Query: 378 EAERLHKHFSEQGTDKNAWFGGRRSLFLPGGNRQLFGYMATKEDLDIFNKHCPVKSSSRL 437
K ++ G K W G L+G++A +D +N + + + R
Sbjct: 196 NGLLFDKAYTVDGHGKKDWLKK------DGPKLGLYGWIARADD---YNGNNIIGENLRK 246
Query: 438 KYDMRSYQEMVVNQIRQMNEDNQQLIY--LKNKVDKEKKHSKALEESFGIVSEKLRKTMQ 495
D+++ E+ + R+ Q+L+ L+ V+++KK K +EE + SE+L + M+
Sbjct: 247 TGDLKTIAELTEEEARK-----QELLVQNLRQLVEEKKKDMKEIEELCSVKSEELNQLME 301
Query: 496 ENRIVLLRTKEQQKENKEEMDMQEEFFKEQIRVIHDSRNAKDEDFERMQQEEREKV 551
E + K QQK +E +QE +++ D E +R+ + ER+K+
Sbjct: 302 E------KEKNQQKHYRELNAIQERTMSHIQKIVDDH-----EKLKRLLESERKKL 346