Miyakogusa Predicted Gene
- Lj1g3v1385240.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1385240.2 Non Chatacterized Hit- tr|I0YYR8|I0YYR8_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,46.02,0.000000000000001,coiled-coil,NULL; seg,NULL,CUFF.27271.2
(307 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknow... 214 4e-56
AT5G23610.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 214 4e-56
AT5G51330.1 | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858752-2086... 165 3e-41
AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfam... 53 2e-07
AT2G01810.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 51 1e-06
>AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to
168 proteins in 34 species: Archae - 3; Bacteria - 10;
Metazoa - 6; Fungi - 2; Plants - 115; Viruses - 0; Other
Eukaryotes - 37 (source: NCBI BLink). |
chr5:7957641-7959968 REVERSE LENGTH=500
Length = 500
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 149/223 (66%), Gaps = 3/223 (1%)
Query: 86 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIEGKVA 145
RW+ ER AEQ++ +++KE+GATF+ P+TR LR+ AR IGDTGLLDH LKH++GKV
Sbjct: 124 RWNNERIKFAEQTLADIMKEKGATFEKPVTRQLLRVIARSKIGDTGLLDHSLKHMDGKVT 183
Query: 146 PGGTDRFRRWFNTDGIMEYWLERADLDEVRQDAGVQDPYWLPPS--TRRAGKQNTDSSRE 203
PGG+DRFRR +NTDG M+YWLE ADL +++ ++G+ DP W+PP+ + + S+
Sbjct: 184 PGGSDRFRRCYNTDGCMQYWLESADLVKIKLESGIPDPTWVPPAWWMVQTASSHDQSAVT 243
Query: 204 LELLKLEMAQMKKDMQELIAKKQEKNEISMMEMTHKEFVKWRAMTDRRLAEITSSLKGVQ 263
+LL E+ QMK +++EL++K+ + E KE WR TD+++ EI+ SL Q
Sbjct: 244 SKLLMGEIEQMKSEIKELVSKQNLPDHADANEKLFKELKSWRENTDKQIVEISESLTSTQ 303
Query: 264 GKHDELMIWKTKVEQQLEEITNKLNDLQAPREGTTFSPPSERW 306
G EL WK KV+QQL I+N L++LQ P T+FSP E W
Sbjct: 304 GMFKELNSWKDKVDQQLLGISNTLSNLQ-PNGSTSFSPAQENW 345
>AT5G23610.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SWITCH1 (TAIR:AT5G51330.1); Has 170 Blast hits to
162 proteins in 36 species: Archae - 3; Bacteria - 6;
Metazoa - 6; Fungi - 4; Plants - 117; Viruses - 0; Other
Eukaryotes - 34 (source: NCBI BLink). |
chr5:7957641-7959968 REVERSE LENGTH=499
Length = 499
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 149/223 (66%), Gaps = 3/223 (1%)
Query: 86 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIEGKVA 145
RW+ ER AEQ++ +++KE+GATF+ P+TR LR+ AR IGDTGLLDH LKH++GKV
Sbjct: 124 RWNNERIKFAEQTLADIMKEKGATFEKPVTRQLLRVIARSKIGDTGLLDHSLKHMDGKVT 183
Query: 146 PGGTDRFRRWFNTDGIMEYWLERADLDEVRQDAGVQDPYWLPPS--TRRAGKQNTDSSRE 203
PGG+DRFRR +NTDG M+YWLE ADL +++ ++G+ DP W+PP+ + + S+
Sbjct: 184 PGGSDRFRRCYNTDGCMQYWLESADLVKIKLESGIPDPTWVPPAWWMVQTASSHDQSAVT 243
Query: 204 LELLKLEMAQMKKDMQELIAKKQEKNEISMMEMTHKEFVKWRAMTDRRLAEITSSLKGVQ 263
+LL E+ QMK +++EL++K+ + E KE WR TD+++ EI+ SL Q
Sbjct: 244 SKLLMGEIEQMKSEIKELVSKQNLPDHADANEKLFKELKSWRENTDKQIVEISESLTSTQ 303
Query: 264 GKHDELMIWKTKVEQQLEEITNKLNDLQAPREGTTFSPPSERW 306
G EL WK KV+QQL I+N L++LQ P T+FSP E W
Sbjct: 304 GMFKELNSWKDKVDQQLLGISNTLSNLQ-PNGSTSFSPAQENW 345
>AT5G51330.1 | Symbols: SWI1, DYAD | SWITCH1 |
chr5:20858752-20861680 REVERSE LENGTH=639
Length = 639
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
Query: 85 ERWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIEGKV 144
+RWS ERY LAE++M +V+KE+ A F N I RP LR ARK IGDTGLLDHLLKH+ GKV
Sbjct: 294 DRWSVERYKLAERNMLKVMKEKNAVFGNSILRPELRSEARKLIGDTGLLDHLLKHMAGKV 353
Query: 145 APGGTDRFRRWFNTDGIMEYWLERADLDEVRQDAGVQDPYWLPPSTRRAG---KQNTDSS 201
APGG DRF R N DG MEYWLE +DL +R++AGV+DPYW PP + G Q+ +
Sbjct: 354 APGGQDRFMRKHNADGAMEYWLESSDLIHIRKEAGVKDPYWTPPPGWKLGDNPSQDPVCA 413
Query: 202 RELELLKLEMAQMKKDMQELIAKKQEKNEISM 233
E+ ++ E+A +K+++++L +KK+E+ + M
Sbjct: 414 GEIRDIREELASLKRELKKLASKKEEEELVIM 445
>AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily
protein | chr1:24638793-24641222 REVERSE LENGTH=704
Length = 704
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 86 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIEGKVA 145
RW R A + + E LKE A N +TR +R +AR HIGDTGLLD++LK + V
Sbjct: 341 RWPVRRLIFAAEVIVESLKEMKALKQNGMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVV 400
Query: 146 PGGTDRFRRWFN-TDGIMEYWLERADLDE 173
G RR+ + I+ Y ++ DLD+
Sbjct: 401 --GDVLVRRYVDPITRILHYTIQ--DLDD 425
>AT2G01810.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:347537-349952 FORWARD LENGTH=697
Length = 697
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 86 RWSAERYSLAEQSMWEVLKEEGATFDNPITRPALRLAARKHIGDTGLLDHLLKHIEGKVA 145
RW R + A Q++ +V KE +T I+R LR A R IGDTGL+D LLKHI+ KV
Sbjct: 373 RWPGRRLNDAAQAVLKVFKERNST----ISRQDLREAVRSSIGDTGLIDFLLKHID-KVL 427
Query: 146 PG 147
G
Sbjct: 428 IG 429