Miyakogusa Predicted Gene
- Lj1g3v1385240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1385240.1 tr|Q5EAG3|Q5EAG3_ARATH At5g23610 OS=Arabidopsis
thaliana PE=2 SV=1,30.74,1e-18, ,CUFF.27271.1
(220 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23610.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 100 7e-22
AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknow... 98 4e-21
>AT5G23610.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SWITCH1 (TAIR:AT5G51330.1); Has 170 Blast hits to
162 proteins in 36 species: Archae - 3; Bacteria - 6;
Metazoa - 6; Fungi - 4; Plants - 117; Viruses - 0; Other
Eukaryotes - 34 (source: NCBI BLink). |
chr5:7957641-7959968 REVERSE LENGTH=499
Length = 499
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 39/243 (16%)
Query: 1 MQELIAKKQEKNEISMMEMTHKEFVKWRAMTDRRLAEITSSLKGVQGKHDELMIWKTKVE 60
++EL++K+ + E KE WR TD+++ EI+ SL QG EL WK KV+
Sbjct: 258 IKELVSKQNLPDHADANEKLFKELKSWRENTDKQIVEISESLTSTQGMFKELNSWKDKVD 317
Query: 61 QQLEEITNKLNDLQAPREGTTFSPPSERWKDWIQGTDWIQSTNLDNVQEDGFATWIGSSE 120
QQL I+N L++LQ P T+FSP E W+ ++++NL++ +GF W +
Sbjct: 318 QQLLGISNTLSNLQ-PNGSTSFSPAQENWE------HILKTSNLEDFTTNGFDQW---DD 367
Query: 121 LIN-VPQGVVLEDPNSIIPAEPL---------------------NEELTYKKSDGTEMVP 158
LI+ +P+ V E +P P ++ L TE +
Sbjct: 368 LIDGLPEAVRPE--TYALPTNPCKSSLQDQSLISLQDQSLVSLQDQSLVNVDMQMTESMT 425
Query: 159 MGQ-----EEQPNVTPDSSTTVNSKSDLDNTLMMYQEMFMDLFKWKEKMEQQLLDVSNTV 213
G+ +E+ +TP SS T KSD+D+ + QE +L WK K EQQL+++SN V
Sbjct: 426 RGESRSSSQEKAEMTPGSSITAGPKSDIDDPTIQTQETLKELVTWKAKAEQQLMELSNAV 485
Query: 214 YGM 216
+
Sbjct: 486 LAL 488
>AT5G23610.2 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: SWITCH1 (TAIR:AT5G51330.1); Has 173 Blast hits to
168 proteins in 34 species: Archae - 3; Bacteria - 10;
Metazoa - 6; Fungi - 2; Plants - 115; Viruses - 0; Other
Eukaryotes - 37 (source: NCBI BLink). |
chr5:7957641-7959968 REVERSE LENGTH=500
Length = 500
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 40/244 (16%)
Query: 1 MQELIAKKQEKNEISMMEMTHKEFVKWRAMTDRRLAEITSSLKGVQGKHDELMIWKTKVE 60
++EL++K+ + E KE WR TD+++ EI+ SL QG EL WK KV+
Sbjct: 258 IKELVSKQNLPDHADANEKLFKELKSWRENTDKQIVEISESLTSTQGMFKELNSWKDKVD 317
Query: 61 QQLEEITNKLNDLQAPREGTTFSPPSERWKDWIQGTDWIQSTNLDNVQEDGFATWIGSSE 120
QQL I+N L++LQ P T+FSP E W+ ++++NL++ +GF W +
Sbjct: 318 QQLLGISNTLSNLQ-PNGSTSFSPAQENWE------HILKTSNLEDFTTNGFDQW---DD 367
Query: 121 LIN-VPQGVVLEDPNSIIPAEPL-------------NEELTYKKSDGTEMVPM------- 159
LI+ +P+ V E +P P ++ L + V M
Sbjct: 368 LIDGLPEAVRPE--TYALPTNPCKSSLQDQSLISLQDQSLVSLQDQSLVNVDMQMTESSM 425
Query: 160 -------GQEEQPNVTPDSSTTVNSKSDLDNTLMMYQEMFMDLFKWKEKMEQQLLDVSNT 212
+E+ +TP SS T KSD+D+ + QE +L WK K EQQL+++SN
Sbjct: 426 TRGESRSSSQEKAEMTPGSSITAGPKSDIDDPTIQTQETLKELVTWKAKAEQQLMELSNA 485
Query: 213 VYGM 216
V +
Sbjct: 486 VLAL 489