Miyakogusa Predicted Gene

Lj1g3v1384120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1384120.1 Non Chatacterized Hit- tr|K4B349|K4B349_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.01,1e-18,seg,NULL; coiled-coil,NULL,CUFF.27254.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26520.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    70   3e-13
AT3G57500.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    65   1e-11

>AT2G26520.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in
          11 species: Archae - 0; Bacteria - 1; Metazoa - 0;
          Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr2:11280280-11280717
          FORWARD LENGTH=145
          Length = 145

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 2  SVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGGSYDIESWVETKCSSCVGGRI 57
          ++GP IAV  V+TVL V+A +IGRLCSG+ ++G+ G YD+E W E++C SC+ G I
Sbjct: 30 TIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGY-GDYDMERWAESRCGSCIDGHI 84


>AT3G57500.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in
          11 species: Archae - 0; Bacteria - 1; Metazoa - 0;
          Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr3:21281980-21282351
          FORWARD LENGTH=123
          Length = 123

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 2  SVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGGSYDIESWVETKCSSCVGGRI 57
          S+  ++ VLAVIT+L V+AG+  RLC GR  + HGG +DIE WVE KC SC+   I
Sbjct: 37 SIETLVVVLAVITILSVLAGVFARLCGGRH-LSHGGDHDIEGWVERKCRSCIDAGI 91