Miyakogusa Predicted Gene

Lj1g3v1384100.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1384100.1 Non Chatacterized Hit- tr|I1J8W6|I1J8W6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.79,0,seg,NULL;
NUCLEOLAR RNA-ASSOCIATED PROTEIN,Nrap protein; Nrap,Nrap
protein,CUFF.27263.1
         (650 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63810.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nrap prote...   782   0.0  

>AT1G63810.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nrap protein
           (InterPro:IPR005554); Has 396 Blast hits to 382 proteins
           in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142;
           Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes
           - 60 (source: NCBI BLink). | chr1:23669690-23675542
           REVERSE LENGTH=1053
          Length = 1053

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/610 (60%), Positives = 479/610 (78%), Gaps = 2/610 (0%)

Query: 32  KLVDDTVAAIKASIDTIPDDFKVTADLASSFVKDIGADK-VEFKFKKPSFVKIGGSYSTQ 90
           KLVDDTV++IK +ID IP+ F+VT++LA SFV+DIGADK VEF FKKP+   + GSYS  
Sbjct: 30  KLVDDTVSSIKEAIDGIPEKFQVTSELAPSFVEDIGADKEVEFSFKKPNGFNLCGSYSIC 89

Query: 91  TLTRPELNIDLIIRLPKECFHEKDYLNYRYHAXXXXXXXXXXXXXXXXXXXDRVEWSTMQ 150
            + +P+ ++DL++ LPKECF+EKDY+N+RYHA                   ++V WST+ 
Sbjct: 90  GMAKPDTSVDLLVHLPKECFYEKDYMNHRYHAKRCLYLCVIEKHLLSSSSIEKVVWSTLH 149

Query: 151 NEARKPLLNVYPAAKLAEFPGVFVRIIPSAASLFNVQKLNLKRNNIHNLNTGTAIQATPK 210
           NEARKP+L V+PA KL +FPG  +R+IPSA SLF+V KL++ RNN+ ++      + TP 
Sbjct: 150 NEARKPVLVVFPAKKLDQFPGFSIRLIPSATSLFSVAKLSISRNNVRSVTADGVPEPTPT 209

Query: 211 YNTSILEDMLIED-TEFINNFFLGWKELREVLILLKVWARQRSSIYVHDCLNGFLISIIL 269
           YN+SILEDM +E+ +EF+   F  WKEL + LILLK+WARQRSSIYVHDCLNGFLIS+IL
Sbjct: 210 YNSSILEDMFLEENSEFLKKTFSEWKELSDALILLKIWARQRSSIYVHDCLNGFLISVIL 269

Query: 270 AYLASKQQISKSMKAIEIIRITLNFIATSESWSRGLYFPKEGPSNITKEERMQLKESFPV 329
           +YLA+  +I+K++ A++I R+TL+FIATS+ W RGLY P +    ++KEE+MQ +E FPV
Sbjct: 270 SYLATHSKINKALSALDIFRVTLDFIATSKLWERGLYLPPQSEIRVSKEEKMQFRELFPV 329

Query: 330 VIRHPSGGFNLAFRMSKIGFIQFLNEAALTLKCMEKCRDGGFEEVFMTKIDCAVKYDYCM 389
           VI   S   NLAFRM+ +GF++  +EA+LTLKCMEK RDGGFEE+FMTKID  VKYD+C+
Sbjct: 330 VICDSSTFVNLAFRMTSVGFLELQDEASLTLKCMEKLRDGGFEEIFMTKIDYPVKYDHCI 389

Query: 390 RIHLKGKKEVYASGFCLDDECWRLYEEKIHGILAKGLNDRAKFIRVMWRNAQCQWSVDEG 449
           R+ LKGK  V  SGFCLD ECWRLYE+K+H +L +GL DRAK IRV+WRN    W V+ G
Sbjct: 390 RLQLKGKTAVSLSGFCLDKECWRLYEQKVHSLLLEGLGDRAKSIRVVWRNTNQDWHVESG 449

Query: 450 LSVLDKEPLFVGISVNTLEKAFRMVDIGPDSDNKVEALEFRKFWGEKAELRRFKDGRIAE 509
           LSVLD+EPLF+GISV++ EKA+R VDIGPD++NK+EAL FRKFWGEK++LRRFKDGRI+E
Sbjct: 450 LSVLDREPLFIGISVSSTEKAYRTVDIGPDAENKIEALRFRKFWGEKSDLRRFKDGRISE 509

Query: 510 STVWESEQWARHLILKRIAEHVLSRHLCLSKENIVVVVDQLDFSLAHGVVEPISYNGKLL 569
           STVWE++QW +HLI+K+I E++L RHL L+ ++IV +VDQLDFSL +G  +PIS +G L+
Sbjct: 510 STVWETQQWTKHLIMKQIVEYILKRHLSLTSDDIVQLVDQLDFSLNYGGKDPISLSGNLV 569

Query: 570 EAFDTLSKRLRLIEDLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIESLRLNKVVPSC 629
           +A++ LSK LR IE +PLKVSSVQ LDSA RFTSVFPPEPH +A EKI+S RL K++PSC
Sbjct: 570 QAYEVLSKCLREIEGIPLKVSSVQSLDSALRFTSVFPPEPHPVACEKIDSRRLQKLIPSC 629

Query: 630 IQPLEVMIQV 639
           I  +EVMIQ+
Sbjct: 630 IPAMEVMIQL 639