Miyakogusa Predicted Gene

Lj1g3v1379770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1379770.1 Non Chatacterized Hit- tr|D7SZY7|D7SZY7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,74.23,1e-16,seg,NULL; coiled-coil,NULL,CUFF.27220.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13340.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    70   4e-13

>AT5G13340.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:4277939-4279397 REVERSE LENGTH=242
          Length = 242

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 51/83 (61%)

Query: 39  KNVEEKLNSDEVRLEIERRVAEGVKTLFDDVEAQLGKEKEDXXXXXXXXXXXXXXXXXXX 98
           KNVEE++ ++EV+ EIERR  E  + +F DVE QL KEKE                    
Sbjct: 106 KNVEERMKTEEVKEEIERRTKEAYEKMFLDVEIQLKKEKEAALNEARRKEEQARREREEL 165

Query: 99  DKMLEENRRRVEESQRREALEQQ 121
           DKMLEEN RRVEESQRREA+E Q
Sbjct: 166 DKMLEENSRRVEESQRREAMELQ 188