Miyakogusa Predicted Gene

Lj1g3v1374530.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1374530.3 Non Chatacterized Hit- tr|C5X6K7|C5X6K7_SORBI
Putative uncharacterized protein Sb02g012440
OS=Sorghu,31.11,1e-18,ZINC FINGER, CCHC DOMAIN CONTAINING 11,NULL;
POLY(A) POLYMERASE CID (PAP)-RELATED,NULL; seg,NULL; no,CUFF.27270.3
         (355 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45750.1 | Symbols:  | Nucleotidyltransferase family protein ...   254   9e-68
AT3G45750.2 | Symbols:  | Nucleotidyltransferase family protein ...   204   5e-53
AT3G45760.1 | Symbols:  | Nucleotidyltransferase family protein ...   181   8e-46
AT3G45760.2 | Symbols:  | Nucleotidyltransferase family protein ...   171   8e-43
AT2G39740.1 | Symbols:  | Nucleotidyltransferase family protein ...   107   1e-23
AT2G45620.1 | Symbols:  | Nucleotidyltransferase family protein ...    76   4e-14

>AT3G45750.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16793855-16797380 REVERSE LENGTH=682
          Length = 682

 Score =  254 bits (648), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/300 (45%), Positives = 184/300 (61%), Gaps = 2/300 (0%)

Query: 29  KQVLQAVVSTKQEKLESEILRKIKFTQTCVSELDGLLCDTYVRMCPKEIDSFNRITLLRI 88
           K V   V+  K     S  L++ K     + +LD +L D Y    P   D   R  L++ 
Sbjct: 11  KNVSSKVIRKKVNNTVSIALKRYKIDSYILLDLDKVLNDVYCSFRPVSADYNTRKELVKN 70

Query: 89  FNLVAEELYGNSHDI-PVVEGHGSFVMDMFTNVSDLDLSINF-HAKRENSLHEKIKALLR 146
            N +A ++YG S +  PV+E +GSFVMDM+++ SDLD+SINF +   E    +K++ L R
Sbjct: 71  LNTMALDIYGKSEESSPVLEAYGSFVMDMYSSQSDLDVSINFGNGTSEIPREKKLEILKR 130

Query: 147 FRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXX 206
           F  KL SL+ EG V  V+S   A+VPI+KF+++ TG+EC+LSV N DG            
Sbjct: 131 FAKKLRSLQGEGQVKNVESIFSAKVPIVKFSDQGTGVECDLSVENKDGILNSQIVRIISQ 190

Query: 207 XDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDG 266
            D RF+KLC L+K WAKAH + S+    LN +SI L VA HLQT NPPILPPFS+LLKDG
Sbjct: 191 IDGRFQKLCLLVKHWAKAHEVNSALHRTLNSVSITLLVALHLQTQNPPILPPFSMLLKDG 250

Query: 267 ADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILKYW 326
            D  +V K  + + N+G++N+ESL +LF T  +KL SVE LW QG+C SV  G WI K W
Sbjct: 251 MDPPNVEKRAQKFLNWGQRNQESLGRLFATFFIKLQSVEFLWRQGLCVSVLNGLWISKKW 310


>AT3G45750.2 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16793855-16796913 REVERSE LENGTH=614
          Length = 614

 Score =  204 bits (520), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 143/242 (59%), Gaps = 29/242 (11%)

Query: 114 MDMFTNVSDLDLSINF-HAKRENSLHEKIKALLRFRDKLDSLE----------------- 155
           MDM+++ SDLD+SINF +   E    +K++ L RF  KL SL+                 
Sbjct: 1   MDMYSSQSDLDVSINFGNGTSEIPREKKLEILKRFAKKLRSLQGKIFVPFFLLLSCMPIP 60

Query: 156 -----------REGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXX 204
                      REG V  V+S   A+VPI+KF+++ TG+EC+LSV N DG          
Sbjct: 61  LLFSIYTKNPNREGQVKNVESIFSAKVPIVKFSDQGTGVECDLSVENKDGILNSQIVRII 120

Query: 205 XXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLK 264
              D RF+KLC L+K WAKAH + S+    LN +SI L VA HLQT NPPILPPFS+LLK
Sbjct: 121 SQIDGRFQKLCLLVKHWAKAHEVNSALHRTLNSVSITLLVALHLQTQNPPILPPFSMLLK 180

Query: 265 DGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILK 324
           DG D  +V K  + + N+G++N+ESL +LF T  +KL SVE LW QG+C SV  G WI K
Sbjct: 181 DGMDPPNVEKRAQKFLNWGQRNQESLGRLFATFFIKLQSVEFLWRQGLCVSVLNGLWISK 240

Query: 325 YW 326
            W
Sbjct: 241 KW 242


>AT3G45760.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16801996-16804759 REVERSE LENGTH=474
          Length = 474

 Score =  181 bits (458), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 98/236 (41%), Positives = 142/236 (60%), Gaps = 2/236 (0%)

Query: 68  TYVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDI-PVVEGHGSFVMDMFTNVSDLDLS 126
            Y    P   D   R  L++  N +A +++G S +  PV+E +GSF M+ F++  DLD+S
Sbjct: 50  AYSSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVS 109

Query: 127 INFHAKRENSLHEK-IKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIEC 185
           INF +       EK ++ L RF  KL SLE +G V  V   + A VPI++F ++ TGIEC
Sbjct: 110 INFSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIEC 169

Query: 186 NLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVA 245
           +L+V + DG             D+RF+KLC L+K WA+AH + ++    LN +SI + VA
Sbjct: 170 DLTVESKDGILTSQIIRIISQIDDRFQKLCLLIKHWARAHGVNNASHNTLNSISITMLVA 229

Query: 246 FHLQTCNPPILPPFSILLKDGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKL 301
            HLQT +PPILPPFS L KDG D   V K  + + N+G++N+ESL +LF T  +K+
Sbjct: 230 HHLQTQSPPILPPFSTLFKDGIDPPIVEKRTQKFLNWGQRNQESLGRLFATFFIKV 285


>AT3G45760.2 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16802253-16804759 REVERSE LENGTH=447
          Length = 447

 Score =  171 bits (433), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 142/251 (56%), Gaps = 17/251 (6%)

Query: 68  TYVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDI-PVVEGHGSFVMDMFTNVSDLDLS 126
            Y    P   D   R  L++  N +A +++G S +  PV+E +GSF M+ F++  DLD+S
Sbjct: 50  AYSSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVS 109

Query: 127 INFHAKRENSLHEK-IKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIEC 185
           INF +       EK ++ L RF  KL SLE +G V  V   + A VPI++F ++ TGIEC
Sbjct: 110 INFSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIEC 169

Query: 186 NLSVNNWDGXXXXXXXXXXXXXDERFRKLCFL---------------MKSWAKAHYIYSS 230
           +L+V + DG             D+RF+KLC L               +K WA+AH + ++
Sbjct: 170 DLTVESKDGILTSQIIRIISQIDDRFQKLCLLHCQLFSTNVNIVICQIKHWARAHGVNNA 229

Query: 231 KDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDGADVMSVTKIVETYRNYGKQNKESL 290
               LN +SI + VA HLQT +PPILPPFS L KDG D   V K  + + N+G++N+ESL
Sbjct: 230 SHNTLNSISITMLVAHHLQTQSPPILPPFSTLFKDGIDPPIVEKRTQKFLNWGQRNQESL 289

Query: 291 AKLFITLLVKL 301
            +LF T  +K+
Sbjct: 290 GRLFATFFIKV 300


>AT2G39740.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr2:16576250-16578704 FORWARD LENGTH=511
          Length = 511

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 27/281 (9%)

Query: 61  LDGLLCDTYVRMCPKEIDSFNRITL---LRIFNLVAEELYGNSHDIPVVEGHGSFVMDMF 117
           LD  L +    + P   D   RIT+   LR      E L G +     V+  GSFV ++F
Sbjct: 7   LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGAT-----VQPFGSFVSNLF 61

Query: 118 TNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFT 177
           T   DLD+S++  +        K +        L +L   G    +Q  + A VPI+K  
Sbjct: 62  TRWGDLDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVV 121

Query: 178 ERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNF 237
                I C++S++N DG             D RFR L  L+K WAKAH I  SK G  N 
Sbjct: 122 SGHQRISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNS 181

Query: 238 LSIILFVAFHLQTCNPPILPPFSILLKDGA--DVMSVTKIVE------TYRNYGK----- 284
            S+ L V FH QTC P ILPP  ++    A  D+  V K  E      T  N  +     
Sbjct: 182 YSLSLLVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSER 241

Query: 285 ---QNKESLAKLFITLLVKLASVE-SLWEQGICASVYEGSW 321
               N+ SL++L ++   K + +     E G+C   + G W
Sbjct: 242 AKSVNRSSLSELLVSFFAKFSDINVKAQEFGVCP--FTGRW 280


>AT2G45620.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr2:18792943-18795750 FORWARD LENGTH=764
          Length = 764

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 50/284 (17%)

Query: 33  QAVVSTKQEKLESEILRKIKFTQTCVSEL---DGLLCDTYVRMCPKEID-SFNRITLLRI 88
           ++ V  + ++L  +  R +K    C +++   D      Y  + P E +    R  +  +
Sbjct: 403 ESRVDNRGQRLLGQKARMVKMYMACRNDIHRYDATFIAIYKSLIPAEEELEKQRQLMAHL 462

Query: 89  FNLVAEE-------LYG---NSHDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLH 138
            NLVA+E       LYG   NS   P                SD+D+ +       N   
Sbjct: 463 ENLVAKEWPHAKLYLYGSCANSFGFPK---------------SDIDVCLAIEGDDIN--- 504

Query: 139 EKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXX 198
            K + LL+  + L+S     ++  VQ+   A VPI+K  + VTGI C++ +NN       
Sbjct: 505 -KSEMLLKLAEILES----DNLQNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNT 559

Query: 199 XXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPP 258
                    D R R+L F++K WAK+  +  +  G L+  + +L     LQ   PPILP 
Sbjct: 560 KLLRDYAQIDVRLRQLAFIVKHWAKSRRVNETYQGTLSSYAYVLMCIHFLQQRRPPILP- 618

Query: 259 FSILLKDGADVMSVT---------KIVETYRNYGKQNKESLAKL 293
               L++     SV            V+  RN+G  N+E++A+L
Sbjct: 619 ---CLQEMEPTYSVRVDNIRCTYFDNVDRLRNFGSNNRETIAEL 659