Miyakogusa Predicted Gene

Lj1g3v1374530.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1374530.2 Non Chatacterized Hit- tr|D8SJR3|D8SJR3_SELML
Putative uncharacterized protein OS=Selaginella
moelle,29.44,4e-18,coiled-coil,NULL; ZINC FINGER, CCHC DOMAIN
CONTAINING 11,NULL; POLY(A) POLYMERASE CID (PAP)-RELATED,,CUFF.27270.2
         (573 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45750.1 | Symbols:  | Nucleotidyltransferase family protein ...   295   7e-80
AT3G45750.2 | Symbols:  | Nucleotidyltransferase family protein ...   242   5e-64
AT3G45760.1 | Symbols:  | Nucleotidyltransferase family protein ...   201   8e-52
AT3G45760.2 | Symbols:  | Nucleotidyltransferase family protein ...   190   3e-48
AT2G39740.1 | Symbols:  | Nucleotidyltransferase family protein ...   125   7e-29
AT2G45620.1 | Symbols:  | Nucleotidyltransferase family protein ...    88   2e-17

>AT3G45750.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16793855-16797380 REVERSE LENGTH=682
          Length = 682

 Score =  295 bits (755), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/369 (43%), Positives = 223/369 (60%), Gaps = 4/369 (1%)

Query: 29  KQVLQAVVSTKQEKLESEILRKIKFTQTCVSELDGLLCDTYVRMCPKEIDSFNRITLLRI 88
           K V   V+  K     S  L++ K     + +LD +L D Y    P   D   R  L++ 
Sbjct: 11  KNVSSKVIRKKVNNTVSIALKRYKIDSYILLDLDKVLNDVYCSFRPVSADYNTRKELVKN 70

Query: 89  FNLVAEELYGNSHDI-PVVEGHGSFVMDMFTNVSDLDLSINF-HAKRENSLHEKIKALLR 146
            N +A ++YG S +  PV+E +GSFVMDM+++ SDLD+SINF +   E    +K++ L R
Sbjct: 71  LNTMALDIYGKSEESSPVLEAYGSFVMDMYSSQSDLDVSINFGNGTSEIPREKKLEILKR 130

Query: 147 FRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXX 206
           F  KL SL+ EG V  V+S   A+VPI+KF+++ TG+EC+LSV N DG            
Sbjct: 131 FAKKLRSLQGEGQVKNVESIFSAKVPIVKFSDQGTGVECDLSVENKDGILNSQIVRIISQ 190

Query: 207 XDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDG 266
            D RF+KLC L+K WAKAH + S+    LN +SI L VA HLQT NPPILPPFS+LLKDG
Sbjct: 191 IDGRFQKLCLLVKHWAKAHEVNSALHRTLNSVSITLLVALHLQTQNPPILPPFSMLLKDG 250

Query: 267 ADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILKYW 326
            D  +V K  + + N+G++N+ESL +LF T  +KL SVE LW QG+C SV  G WI K W
Sbjct: 251 MDPPNVEKRAQKFLNWGQRNQESLGRLFATFFIKLQSVEFLWRQGLCVSVLNGLWISKKW 310

Query: 327 NH--HYSMRVEDFMDRSQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQIQGIQLVDFL 384
                 S+ VEDF + SQNV+R V  A  + IY  I++++  + +FLN+++ G  L   L
Sbjct: 311 KKVGVGSISVEDFTNISQNVARRVNGAGAKKIYSSINRTVEDIFEFLNDKVAGTDLRHRL 370

Query: 385 FGTHTVASL 393
           FG  +V  +
Sbjct: 371 FGKGSVVQI 379


>AT3G45750.2 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16793855-16796913 REVERSE LENGTH=614
          Length = 614

 Score =  242 bits (617), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 134/311 (43%), Positives = 182/311 (58%), Gaps = 31/311 (9%)

Query: 114 MDMFTNVSDLDLSINF-HAKRENSLHEKIKALLRFRDKLDSLE----------------- 155
           MDM+++ SDLD+SINF +   E    +K++ L RF  KL SL+                 
Sbjct: 1   MDMYSSQSDLDVSINFGNGTSEIPREKKLEILKRFAKKLRSLQGKIFVPFFLLLSCMPIP 60

Query: 156 -----------REGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXX 204
                      REG V  V+S   A+VPI+KF+++ TG+EC+LSV N DG          
Sbjct: 61  LLFSIYTKNPNREGQVKNVESIFSAKVPIVKFSDQGTGVECDLSVENKDGILNSQIVRII 120

Query: 205 XXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLK 264
              D RF+KLC L+K WAKAH + S+    LN +SI L VA HLQT NPPILPPFS+LLK
Sbjct: 121 SQIDGRFQKLCLLVKHWAKAHEVNSALHRTLNSVSITLLVALHLQTQNPPILPPFSMLLK 180

Query: 265 DGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILK 324
           DG D  +V K  + + N+G++N+ESL +LF T  +KL SVE LW QG+C SV  G WI K
Sbjct: 181 DGMDPPNVEKRAQKFLNWGQRNQESLGRLFATFFIKLQSVEFLWRQGLCVSVLNGLWISK 240

Query: 325 YWNH--HYSMRVEDFMDRSQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQIQGIQLVD 382
            W      S+ VEDF + SQNV+R V  A  + IY  I++++  + +FLN+++ G  L  
Sbjct: 241 KWKKVGVGSISVEDFTNISQNVARRVNGAGAKKIYSSINRTVEDIFEFLNDKVAGTDLRH 300

Query: 383 FLFGTHTVASL 393
            LFG  +V  +
Sbjct: 301 RLFGKGSVVQI 311


>AT3G45760.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16801996-16804759 REVERSE LENGTH=474
          Length = 474

 Score =  201 bits (512), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 172/324 (53%), Gaps = 35/324 (10%)

Query: 69  YVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDI-PVVEGHGSFVMDMFTNVSDLDLSI 127
           Y    P   D   R  L++  N +A +++G S +  PV+E +GSF M+ F++  DLD+SI
Sbjct: 51  YSSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVSI 110

Query: 128 NFHAKRENSLHEK-IKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECN 186
           NF +       EK ++ L RF  KL SLE +G V  V   + A VPI++F ++ TGIEC+
Sbjct: 111 NFSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECD 170

Query: 187 LSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAF 246
           L+V + DG             D+RF+KLC L+K WA+AH + ++    LN +SI + VA 
Sbjct: 171 LTVESKDGILTSQIIRIISQIDDRFQKLCLLIKHWARAHGVNNASHNTLNSISITMLVAH 230

Query: 247 HLQTCNPPILPPFSILLKDGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVES 306
           HLQT +PPILPPFS L KDG D   V K  + + N+G++N+ESL +LF T  +K      
Sbjct: 231 HLQTQSPPILPPFSTLFKDGIDPPIVEKRTQKFLNWGQRNQESLGRLFATFFIK------ 284

Query: 307 LWEQGICASVYEGSWILKYWNHHYSMRVEDFMDRSQNVSRAVGTAKVETIYRCIHKSISY 366
                                      VEDF D ++N +R       E IY  I++++  
Sbjct: 285 ---------------------------VEDFTDVARNFARVFSDYGAEKIYSSINRTVDD 317

Query: 367 LSQFLNNQIQGIQLVDFLFGTHTV 390
           + +FLN ++ G  L   LF   TV
Sbjct: 318 ILEFLNGKVAGEHLTQKLFSQQTV 341


>AT3G45760.2 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16802253-16804759 REVERSE LENGTH=447
          Length = 447

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 172/340 (50%), Gaps = 50/340 (14%)

Query: 69  YVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDI-PVVEGHGSFVMDMFTNVSDLDLSI 127
           Y    P   D   R  L++  N +A +++G S +  PV+E +GSF M+ F++  DLD+SI
Sbjct: 51  YSSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVSI 110

Query: 128 NFHAKRENSLHEK-IKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECN 186
           NF +       EK ++ L RF  KL SLE +G V  V   + A VPI++F ++ TGIEC+
Sbjct: 111 NFSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECD 170

Query: 187 LSVNNWDGXXXXXXXXXXXXXDERFRKLCFL---------------MKSWAKAHYIYSSK 231
           L+V + DG             D+RF+KLC L               +K WA+AH + ++ 
Sbjct: 171 LTVESKDGILTSQIIRIISQIDDRFQKLCLLHCQLFSTNVNIVICQIKHWARAHGVNNAS 230

Query: 232 DGILNFLSIILFVAFHLQTCNPPILPPFSILLKDGADVMSVTKIVETYRNYGKQNKESLA 291
              LN +SI + VA HLQT +PPILPPFS L KDG D   V K  + + N+G++N+ESL 
Sbjct: 231 HNTLNSISITMLVAHHLQTQSPPILPPFSTLFKDGIDPPIVEKRTQKFLNWGQRNQESLG 290

Query: 292 KLFITLLVKLASVESLWEQGICASVYEGSWILKYWNHHYSMRVEDFMDRSQNVSRAVGTA 351
           +LF T  +K                                 VEDF D ++N +R     
Sbjct: 291 RLFATFFIK---------------------------------VEDFTDVARNFARVFSDY 317

Query: 352 KVETIYRCIHKSISYLSQFLNNQIQGIQLVDFLFGTHTVA 391
             E IY  I++++  + +FLN ++ G  L   LF   TV 
Sbjct: 318 GAEKIYSSINRTVDDILEFLNGKVAGEHLTQKLFSQQTVV 357


>AT2G39740.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr2:16576250-16578704 FORWARD LENGTH=511
          Length = 511

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 173/407 (42%), Gaps = 42/407 (10%)

Query: 61  LDGLLCDTYVRMCPKEIDSFNRITL---LRIFNLVAEELYGNSHDIPVVEGHGSFVMDMF 117
           LD  L +    + P   D   RIT+   LR      E L G +     V+  GSFV ++F
Sbjct: 7   LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGAT-----VQPFGSFVSNLF 61

Query: 118 TNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFT 177
           T   DLD+S++  +        K +        L +L   G    +Q  + A VPI+K  
Sbjct: 62  TRWGDLDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVV 121

Query: 178 ERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNF 237
                I C++S++N DG             D RFR L  L+K WAKAH I  SK G  N 
Sbjct: 122 SGHQRISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNS 181

Query: 238 LSIILFVAFHLQTCNPPILPPFSILLKDGA--DVMSVTKIVE------TYRNYGK----- 284
            S+ L V FH QTC P ILPP  ++    A  D+  V K  E      T  N  +     
Sbjct: 182 YSLSLLVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSER 241

Query: 285 ---QNKESLAKLFITLLVKLASVE-SLWEQGICASVYEGSWILKYWN-----HHYSMRVE 335
               N+ SL++L ++   K + +     E G+C   + G W     N       YS+ VE
Sbjct: 242 AKSVNRSSLSELLVSFFAKFSDINVKAQEFGVCP--FTGRWETISSNTTWLPKTYSLFVE 299

Query: 336 DFMDRSQNVSRAVGTAKVETIYRCIH-KSISYLSQFLNNQIQGIQLVDFLFGTHTVASL- 393
           D  ++  N +R+V    ++ I +     S   +S+   N I GI     L G H   SL 
Sbjct: 300 DPFEQPVNAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGI-----LTGQHIQESLY 354

Query: 394 -GVGGTSYISGNHLRSRENLH-QWRLMLQYLKK-VAQNARASFPPSW 437
             +   S    N + +  NLH Q R   Q +++  +Q+     PP W
Sbjct: 355 RTISLPSQHHANGMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHW 401


>AT2G45620.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr2:18792943-18795750 FORWARD LENGTH=764
          Length = 764

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 146/366 (39%), Gaps = 56/366 (15%)

Query: 33  QAVVSTKQEKLESEILRKIKFTQTCVSEL---DGLLCDTYVRMCPKEID-SFNRITLLRI 88
           ++ V  + ++L  +  R +K    C +++   D      Y  + P E +    R  +  +
Sbjct: 403 ESRVDNRGQRLLGQKARMVKMYMACRNDIHRYDATFIAIYKSLIPAEEELEKQRQLMAHL 462

Query: 89  FNLVAEE-------LYG---NSHDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLH 138
            NLVA+E       LYG   NS   P                SD+D+ +       N   
Sbjct: 463 ENLVAKEWPHAKLYLYGSCANSFGFPK---------------SDIDVCLAIEGDDIN--- 504

Query: 139 EKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXX 198
            K + LL+  + L+S     ++  VQ+   A VPI+K  + VTGI C++ +NN       
Sbjct: 505 -KSEMLLKLAEILES----DNLQNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNT 559

Query: 199 XXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPIL-- 256
                    D R R+L F++K WAK+  +  +  G L+  + +L     LQ   PPIL  
Sbjct: 560 KLLRDYAQIDVRLRQLAFIVKHWAKSRRVNETYQGTLSSYAYVLMCIHFLQQRRPPILPC 619

Query: 257 -----PPFSILLKDGADVMSVTKI--VETYRNYGKQNKESLAKLFITLLVKLASVESLW- 308
                P +S+ +    D +  T    V+  RN+G  N+E++A+L        A       
Sbjct: 620 LQEMEPTYSVRV----DNIRCTYFDNVDRLRNFGSNNRETIAELVWGFFNYWAYAHDYAY 675

Query: 309 -----EQGICASVYEGSWILKYWNHHYSMRVEDFMDRSQNVSRAVGTAKVETIYRCIHKS 363
                  G      E  W  +  N  + + +ED  + S ++ R V    +  +     ++
Sbjct: 676 NVVSVRTGSILGKREKDWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVLREEFERA 735

Query: 364 ISYLSQ 369
              + Q
Sbjct: 736 ARIMHQ 741